SMTL ID : 5twj.2 (1 other biounit)

Crystal Structure of RlmH in Complex with S-Adenosylmethionine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 18 residues within 4Å: Chain A: L.79, D.80, I.81, I.109, G.110, G.111, P.112, G.114, L.115, W.127, S.128, L.129, S.130, L.132, T.133, L.134, H.136, V.139 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:T.133 Hydrogen bonds: A:G.110, A:G.111, A:L.115, A:L.129, A:S.130, A:L.132, A:L.134 SAM.2: 19 residues within 4Å: Chain A: E.162 Chain B: L.79, D.80, I.81, I.109, G.110, G.111, P.112, E.113, G.114, L.115, W.127, S.128, L.129, S.130, L.132, L.134, H.136, V.139 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.110, B:L.115, B:L.129, B:S.130, B:L.132, B:L.134 Water bridges: B:K.120, B:K.120 Salt bridges: B:K.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koh, C.S. et al., Small methyltransferase RlmH assembles a composite active site to methylate a ribosomal pseudouridine. Sci Rep (2017)

Release Date

2017-05-03

Peptides

Ribosomal RNA large subunit methyltransferase H: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ribosomal RNA large subunit methyltransferase H

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