SMTL ID : 5tyq.1

Crystal structure of a holoenzyme methyltransferase involved in the biosynthesis of gentamicin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 18 residues within 4Å: Chain A: D.127, D.149, G.151, C.152, G.153, V.156, L.157, D.172, V.173, N.174, G.198, D.199, M.200, N.214, P.216, L.227, L.228, I.234 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:D.127 Hydrogen bonds: A:G.151, A:G.153, A:V.173, A:D.199, A:M.200, A:N.214 Water bridges: A:G.155

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: E.118, D.226 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.118, A:E.118, A:D.226, H2O.1, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bury, P.D.S. et al., Structural Basis of the Selectivity of GenN, an Aminoglycoside N-Methyltransferase Involved in Gentamicin Biosynthesis. ACS Chem. Biol. (2017)

Release Date

2017-11-01

Peptides

Putative gentamicin methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative gentamicin methyltransferase

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