SMTL ID : 5tzk.1

Crystal structure of S. aureus TarS 1-349 in complex with UDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 15 residues within 4Å: Chain A: P.8, T.9, Y.10, S.12, D.40, N.67, G.69, G.70, P.71, P.74, D.91, S.92, D.93, R.126 Ligands: MN.2 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.10 Hydrogen bonds: A:Y.10, A:S.12, A:D.40, A:D.40, A:N.67, A:G.69, A:S.92, A:S.92, A:S.92 Water bridges: A:Y.10, A:S.12, A:D.91, A:D.93, A:D.93, A:R.126 Salt bridges: A:R.126

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 3 residues within 4Å: Chain A: D.93, R.126 Ligands: UDP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.93, A:D.93, H2O.1, H2O.2

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: P.129, Q.130, S.131, M.132, R.146 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.130, A:S.131, A:R.146 SO4.4: 4 residues within 4Å: Chain A: Q.179, F.221, S.257, R.258 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.258 Salt bridges: A:R.258 SO4.5: 4 residues within 4Å: Chain A: E.85, F.86, H.112, R.158 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.85 Water bridges: A:E.85, A:D.109, A:R.158 Salt bridges: A:K.2, A:H.112, A:R.158 SO4.6: 5 residues within 4Å: Chain A: Y.149, T.150, L.151, S.152, R.252 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.150, A:L.151, A:S.152 Salt bridges: A:R.252

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sobhanifar, S. et al., Structure and Mechanism of Staphylococcus aureus TarS, the Wall Teichoic Acid beta-glycosyltransferase Involved in Methicillin Resistance. PLoS Pathog. (2016)

Release Date

2017-01-04

Peptides

Glycosyl transferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Glycosyl transferase

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