SMTL ID : 5tzo.1 (2 other biounits)

Computationally Designed Fentanyl Binder - Fen49*-Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

2 x 7V7: N-phenyl-N-[1-(2-phenylethyl)piperidin-4-yl]propanamide(Non-covalent)

7V7.1: 12 residues within 4Å: Chain A: W.66, R.92, W.93, T.94, G.95, Y.111, T.113, R.115, Q.130, W.132, V.134 Ligands: 7V7.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.66, A:W.93, A:T.94, A:T.113, A:W.132, A:W.132 Hydrogen bonds: A:T.94 pi-Stacking: A:W.132 7V7.2: 23 residues within 4Å: Chain A: L.10, F.12, S.38, F.39, V.40, W.66, G.67, A.68, W.74, Y.83, V.85, W.93, P.119, S.120, I.121, Q.130, W.132, Y.169, A.175, G.176, Y.177 Ligands: 7V7.1, CL.5 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.40, A:A.68, A:W.74, A:Y.83, A:W.132, A:W.132, A:A.175, A:Y.177 Water bridges: A:S.38 pi-Stacking: A:F.12

2 x K: POTASSIUM ION(Non-covalent)

K.3: 4 residues within 4Å: Chain A: N.23, G.24, S.25, K.43 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:N.23, A:G.24 K.4: 4 residues within 4Å: Chain A: Y.97, T.100, D.109, Q.136 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.97, A:D.109, H2O.6

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain A: V.40, V.72, Y.83, A.175 Ligands: 7V7.2 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bick, M.J. et al., Computational design of environmental sensors for the potent opioid fentanyl. Elife (2017)

Release Date

2017-10-04

Peptides

Endo-1,4-beta-xylanase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endo-1,4-beta-xylanase A

Related Entries With Identical Sequence