SMTL ID : 5tzp.1

Crystal structure of FPV039:Bik BH3 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

hetero-1-1-mer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: I.72, D.73, F.74, N.75, Y.101 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.74 EDO.2: 7 residues within 4Å: Chain A: E.63, I.66, I.67, R.70 Chain B: I.1, V.7, Q.10 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.10, A:R.70, A:R.70 EDO.3: 8 residues within 4Å: Chain A: Y.17, I.18, N.21, M.22, V.40, I.41, D.42, W.140 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.41, A:D.42 EDO.4: 3 residues within 4Å: Chain A: I.44, K.147 Ligands: EDO.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.147 Water bridges: A:D.47, A:D.47 EDO.5: 4 residues within 4Å: Chain A: N.71, I.72, D.73 Ligands: EDO.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.72 EDO.6: 7 residues within 4Å: Chain A: D.47, V.48, A.51, Y.146, K.147, N.148 Ligands: EDO.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.147, A:N.148 Water bridges: A:V.48 EDO.7: 3 residues within 4Å: Chain A: S.69, R.70, N.71 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.71

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 2 residues within 4Å: Chain A: I.44, R.144 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.144 Salt bridges: A:R.144 SO4.9: 5 residues within 4Å: Chain A: N.21, Q.24, N.25, I.28, R.36 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.21, A:R.36 Water bridges: A:R.36 SO4.10: 1 residues within 4Å: Chain A: K.34 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.34 SO4.11: 4 residues within 4Å: Chain A: I.57, K.58, Y.61, Y.100 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.58, A:Y.100 SO4.12: 4 residues within 4Å: Chain A: Q.80 Chain B: Q.6, V.7, G.8 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:V.7, A:Q.80 Water bridges: B:I.5 SO4.13: 4 residues within 4Å: Chain A: Q.24, D.115, G.116, E.120 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.24 Water bridges: A:G.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anasir, M.I. et al., Structural basis of apoptosis inhibition by the fowlpox virus protein FPV039. J. Biol. Chem. (2017)

Release Date

2017-05-03

Peptides

Bcl-2-like protein FPV039: A
Bik: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bcl-2-like protein FPV039

Bik

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