SMTL ID : 5tzy.1

GPR40 in complex with AgoPAM AP8 and partial agonist MK-8666

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.22 Å

Oligo State

monomer

Ligands

1 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.1: 5 residues within 4Å: Chain A: Q.19, F.22, G.23, V.26, A.27 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.26, A:A.27

1 x MK6: (5aR,6S,6aS)-3-({2',6'-dimethyl-4'-[3-(methylsulfonyl)propoxy][1,1'-biphenyl]-3-yl}methoxy)-5,5a,6,6a-tetrahydrocyclopropa[4,5]cyclopenta[1,2-c]pyridine-6-carboxylic acid(Non-covalent)

MK6.2: 17 residues within 4Å: Chain A: P.93, A.96, V.97, F.100, Y.104, L.148, L.151, G.152, V.154, F.155, L.171, L.184, R.196, L.199, Y.415, N.419, R.433 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.97, A:F.100, A:F.100, A:F.100, A:V.154, A:F.155, A:F.155, A:L.184, A:L.199 Hydrogen bonds: A:Y.415, A:N.419 Salt bridges: A:R.196, A:R.433

1 x 7OS: (2S,3R)-3-cyclopropyl-3-[(2R)-2-(1-{(1S)-1-[5-fluoro-2-(trifluoromethoxy)phenyl]ethyl}piperidin-4-yl)-3,4-dihydro-2H-1-benzopyran-7-yl]-2-methylpropanoic acid(Non-covalent)

7OS.3: 20 residues within 4Å: Chain A: Y.57, Y.104, A.105, G.108, A.111, A.112, A.115, A.116, L.119, Y.127, S.136, V.139, I.143, L.146, V.147, L.202, L.203, L.206, P.207, I.210 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:A.111, A:A.115, A:L.119, A:V.139, A:V.139, A:I.143, A:L.146, A:L.203, A:P.207, A:I.210, A:I.210 Hydrogen bonds: A:Y.57, A:Y.57 Halogen bonds: A:Y.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, J. et al., Structural basis for the cooperative allosteric activation of the free fatty acid receptor GPR40. Nat. Struct. Mol. Biol. (2017)

Release Date

2017-06-07

Peptides

Free fatty acid receptor 1,Endolysin,Free fatty acid receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Free fatty acid receptor 1,Endolysin,Free fatty acid receptor 1