SMTL ID : 5u04.1

Crystal structure of Zika virus NS5 RNA-dependent RNA polymerase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.409, N.411, C.425, C.544 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.409, A:C.425, A:C.544, H2O.1 ZN.2: 5 residues within 4Å: Chain A: E.134, H.138, C.143, H.144, C.146 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.134, A:H.138, A:C.143, A:C.146

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 5 residues within 4Å: Chain A: R.426, R.434, T.491, W.492, S.493 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:T.491, A:T.491, A:T.491, A:W.492, A:S.493 Water bridges: A:R.426, A:R.426, A:R.426, A:R.426, A:R.426 Salt bridges: A:R.426, A:R.434

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Godoy, A.S. et al., Crystal structure of Zika virus NS5 RNA-dependent RNA polymerase. Nat Commun (2017)

Release Date

2017-02-22

Peptides

Zika Virus NS5 RdRp: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Zika Virus NS5 RdRp