SMTL ID : 5u09.1

High-resolution crystal structure of the human CB1 cannabinoid receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

9 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 4 residues within 4Å: Chain A: L.121, I.128, V.140, F.149 No protein-ligand interaction detected (PLIP) PEG.2: 1 residues within 4Å: Chain A: V.147 No protein-ligand interaction detected (PLIP) PEG.3: 3 residues within 4Å: Chain A: P.143, V.146, C.150 No protein-ligand interaction detected (PLIP) PEG.4: 4 residues within 4Å: Chain A: S.228, R.229, D.230, R.232 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.229, A:D.230, A:R.232, A:R.232 PEG.5: 3 residues within 4Å: Chain A: A.475, L.476, R.482 No protein-ligand interaction detected (PLIP) PEG.6: 2 residues within 4Å: Chain A: L.77, W.153 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.153 PEG.12: 3 residues within 4Å: Chain A: L.121, M.152, I.155 No protein-ligand interaction detected (PLIP) PEG.13: 2 residues within 4Å: Chain A: T.37, T.40 No protein-ligand interaction detected (PLIP) PEG.14: 5 residues within 4Å: Chain A: D.262, K.266, Y.333, G.374, P.376 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.262, A:K.266

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 3 residues within 4Å: Chain A: K.479, R.482, R.486 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.482, A:R.486 SO4.8: 4 residues within 4Å: Chain A: H.131, R.132, G.357, R.360 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.357 Water bridges: A:Y.127 Salt bridges: A:H.131, A:R.132, A:R.360 SO4.9: 4 residues within 4Å: Chain A: E.45, P.471, I.472, A.475 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.45 SO4.11: 2 residues within 4Å: Chain A: S.97, N.99 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.97, A:S.97, A:V.100 Water bridges: A:N.99

1 x 7DY: N-[(2S,3S)-4-(4-chlorophenyl)-3-(3-cyanophenyl)butan-2-yl]-2-methyl-2-{[5-(trifluoromethyl)pyridin-2-yl]oxy}propanamide(Non-covalent)

7DY.10: 19 residues within 4Å: Chain A: M.15, D.16, I.17, F.20, I.31, S.35, G.78, F.82, L.105, V.108, F.180, W.191, W.433, F.456, A.457, S.460, M.461, C.463, L.464 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.17, A:I.17, A:F.20, A:F.82, A:L.105, A:V.108, A:V.108, A:F.180, A:F.456 Hydrogen bonds: A:S.460, A:S.460 Water bridges: A:S.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shao, Z. et al., High-resolution crystal structure of the human CB1 cannabinoid receptor. Nature (2016)

Release Date

2016-12-07

Peptides

Cannabinoid receptor 1,GlgA glycogen synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Cannabinoid receptor 1,GlgA glycogen synthase