SMTL ID : 5u0b.1 (1 other biounit)

Structure of full-length Zika virus NS5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 18 residues within 4Å: Chain A: S.56, G.58, G.81, C.82, G.83, R.84, G.85, G.86, W.87, T.104, K.105, H.110, V.130, D.131, V.132, F.133, D.146, I.147 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.56, A:G.58, A:R.84, A:G.85, A:G.86, A:W.87, A:K.105, A:D.131, A:D.131, A:V.132, A:D.146

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: E.439, H.443, C.448, H.449, C.451 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.439, A:H.443, A:C.448, A:C.451 ZN.3: 4 residues within 4Å: Chain A: H.714, N.716, C.730, C.849 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.714, A:C.730, A:C.849

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: R.37, R.41, S.56, R.57, R.84 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.57 Salt bridges: A:R.37, A:R.41, A:R.57, A:R.84 SO4.5: 4 residues within 4Å: Chain A: R.473, A.537, G.538, K.691 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.538 Salt bridges: A:R.473, A:K.691 SO4.6: 3 residues within 4Å: Chain A: A.409, L.410, G.411 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.410, A:G.411

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, B. et al., Structure and function of the Zika virus full-length NS5 protein. Nat Commun (2017)

Release Date

2017-03-29

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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