SMTL ID : 5u0z.1

E. coli dihydropteroate synthase complexed with an 8-mercaptoguanine derivative

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-dimer

Ligands

2 x 7PM: (2R)-[(2-amino-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl](phenyl)acetic acid(Non-covalent)

7PM.1: 11 residues within 4Å: Chain A: T.64, D.98, N.117, I.119, M.141, D.187, F.192, L.217, G.219, K.223, R.257 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:D.98, A:N.117, A:N.117, A:G.219, A:K.223 Water bridges: A:G.189, A:F.190, A:R.257 Salt bridges: A:D.98, A:D.187, A:K.223, A:R.257, A:H.259 pi-Cation interactions: A:R.257 7PM.2: 12 residues within 4Å: Chain B: R.65, P.66, N.117, I.119, C.139, M.141, D.187, F.192, L.217, G.219, K.223, R.257 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:R.65, B:P.66, B:F.192 Hydrogen bonds: B:N.117, B:N.117, B:K.223 Water bridges: B:D.98, B:G.189, B:G.219, B:R.257, B:R.257 Salt bridges: B:D.187, B:K.223, B:R.257, B:H.259 pi-Cation interactions: B:R.257

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dennis, M.L. et al., 8-Mercaptoguanine Derivatives as Inhibitors of Dihydropteroate Synthase. Chemistry (2018)

Release Date

2017-12-06

Peptides

Dihydropteroate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dihydropteroate synthase

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