SMTL ID : 5u1h.3 (4 other biounits)

Crystal structure of the C-terminal peptidoglycan binding domain of OprF (PA1777) from Pseudomonas aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x 7QA: (2R,6S)-2-amino-6-(carboxyamino)-7-{[(1R)-1-carboxyethyl]amino}-7-oxoheptanoic acid(Non-covalent)

7QA.1: 11 residues within 4Å: Chain A: F.19, D.20, T.53, D.54, V.56, G.57, Y.61, N.62, L.65, R.69, R.112 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.19, A:F.19, A:D.20, A:Y.61, A:L.65 Hydrogen bonds: A:D.20, A:D.20, A:D.20, A:D.54, A:D.54, A:V.56, A:V.56, A:N.62 Water bridges: A:T.58 Salt bridges: A:R.69, A:R.112

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: T.58, D.59 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.59 SO4.3: 3 residues within 4Å: Chain A: S.55, V.56, G.57 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.57 SO4.4: 2 residues within 4Å: Chain A: E.117, E.119 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.117, A:E.119 SO4.5: 3 residues within 4Å: Chain A: V.88, N.89, A.90 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.90 Water bridges: A:R.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watanabe, N., Crystal structure of the C-terminal peptidoglycan binding domain of OprF (PA1777) from Pseudomonas aeruginosa. To be published

Release Date

2017-01-11

Peptides

Outer membrane porin F: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Outer membrane porin F

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