SMTL ID : 5u32.1

Crystal Structure of Fungal RNA Kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 14 residues within 4Å: Chain A: I.22, G.23, C.24, G.25, K.26, T.27, T.28, R.129, D.184, K.189, S.190, S.191, L.227 Ligands: MG.2 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:G.23, A:C.24, A:G.25, A:K.26, A:T.27, A:T.28, A:T.28, A:R.129, A:S.190, A:S.191, A:S.191, A:L.227 Water bridges: A:K.26, A:K.26, A:K.26, A:T.27, A:T.27 Salt bridges: A:K.26, A:D.184 pi-Cation interactions: A:R.129

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.27, D.46 Ligands: GDP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.27, H2O.1, H2O.2, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Remus, B.S. et al., Structural basis for the GTP specificity of the RNA kinase domain of fungal tRNA ligase. Nucleic Acids Res. (2017)

Release Date

2017-11-15

Peptides

tRNA ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

tRNA ligase