SMTL ID : 5u3b.2 (1 other biounit)

Pseudomonas aeruginosa LpxC in complex with NVS-LPXC-01

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.78, H.237, D.241 Ligands: 7TD.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.78, A:H.237, A:D.241, A:D.241

1 x 7TD: N-[(2S)-3-amino-1-(hydroxyamino)-3-methyl-1-oxobutan-2-yl]-4-[(but-2-yn-1-yl)oxy]benzamide(Non-covalent)

7TD.2: 20 residues within 4Å: Chain A: L.18, H.19, M.62, E.77, H.78, T.190, F.191, I.197, L.200, R.201, A.206, G.209, S.210, A.214, V.216, H.237, K.238, D.241, H.264 Ligands: ZN.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.18, A:L.18, A:F.191, A:I.197, A:L.200, A:A.206, A:V.216 Hydrogen bonds: A:M.62, A:E.77, A:T.190, A:T.190 Water bridges: A:K.238

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.3: 6 residues within 4Å: Chain A: R.41, L.44, D.70, V.71, K.72, S.98 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.72 Salt bridges: A:R.41, A:D.70, A:D.70, A:K.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Piizzi, G. et al., Design, Synthesis, and Properties of a Potent Inhibitor of Pseudomonas aeruginosa Deacetylase LpxC. J. Med. Chem. (2017)

Release Date

2017-06-07

Peptides

UDP-3-O-acyl-N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

UDP-3-O-acyl-N-acetylglucosamine deacetylase

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