SMTL ID : 5u4q.1

1.5 Angstrom Resolution Crystal Structure of NAD-Dependent Epimerase from Klebsiella pneumoniae in Complex with NAD.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 28 residues within 4Å: Chain A: G.10, A.12, G.13, F.14, I.15, D.34, N.35, M.36, N.37, Y.40, K.45, L.62, D.63, L.64, L.85, A.86, A.87, A.89, A.104, A.127, S.128, Y.154, K.158, F.181, F.182, T.183, V.184, R.190 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:F.181 Hydrogen bonds: A:F.14, A:I.15, A:N.35, A:N.37, A:N.37, A:Y.40, A:Y.40, A:K.45, A:K.45, A:D.63, A:L.64, A:L.85, A:A.87, A:Y.154, A:K.158, A:V.184, A:R.190 Water bridges: A:G.16, A:N.35, A:A.104, A:V.184 Salt bridges: A:R.190, A:R.190 NAD.3: 28 residues within 4Å: Chain B: G.10, A.12, G.13, F.14, I.15, D.34, N.35, M.36, N.37, Y.40, K.45, L.62, D.63, L.64, L.85, A.86, A.87, A.104, A.127, S.128, Y.154, K.158, F.181, F.182, T.183, V.184, R.190, M.193 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:F.181 Hydrogen bonds: B:F.14, B:I.15, B:N.35, B:N.37, B:N.37, B:Y.40, B:K.45, B:K.45, B:D.63, B:L.64, B:L.85, B:A.87, B:Y.154, B:K.158, B:V.184, B:R.190 Water bridges: B:G.16, B:N.35 Salt bridges: B:R.190, B:R.190

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: Y.185, G.186, A.194, L.195, F.196, F.327 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 1.5 Angstrom Resolution Crystal Structure of NAD-Dependent Epimerase from Klebsiella pneumoniae in Complex with NAD. To Be Published

Release Date

2016-12-14

Peptides

dTDP-glucose 4,6-dehydratase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

dTDP-glucose 4,6-dehydratase