SMTL ID : 5u5l.1

X-ray Crystal Structure of the PPARgamma Ligand Binding Domain in Complex with Rivoglitazone

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

1 x 7VA: (5S)-5-({4-[(6-methoxy-1-methyl-1H-benzimidazol-2-yl)methoxy]phenyl}methyl)-1,3-thiazolidine-2,4-dione(Non-covalent)

7VA.1: 18 residues within 4Å: Chain A: R.76, I.77, F.78, G.80, C.81, Q.82, S.85, H.119, I.122, Y.123, L.126, I.137, M.144, L.149, M.160, H.245, L.265, Y.269 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.77, A:I.122, A:Y.123, A:I.137 Hydrogen bonds: A:S.85, A:Y.269 pi-Cation interactions: A:H.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rajapaksha, H. et al., X-ray crystal structure of rivoglitazone bound to PPAR gamma and PPAR subtype selectivity of TZDs. Biochim. Biophys. Acta (2017)

Release Date

2017-08-23

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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