SMTL ID : 5u6c.1

Crystal structure of the Mer kinase domain in complex with a macrocyclic inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x 7YS: (10R)-7-amino-11-chloro-12-fluoro-1-(2-hydroxyethyl)-3,10,16-trimethyl-16,17-dihydro-1H-8,4-(azeno)pyrazolo[4,3-h][2,5,11]benzoxadiazacyclotetradecin-15(10H)-one(Non-covalent)

7YS.1: 15 residues within 4Å: Chain A: L.44, V.52, A.68, M.101, L.122, P.123, F.124, M.125, G.128, D.129, R.178, N.179, M.181, A.191, D.192 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.44, A:V.52, A:L.122, A:F.124 Hydrogen bonds: A:P.123, A:M.125, A:D.129, A:D.129 Water bridges: A:Y.127 Halogen bonds: A:N.179 7YS.2: 15 residues within 4Å: Chain B: L.44, V.52, A.68, M.101, L.122, P.123, F.124, M.125, G.128, D.129, R.178, N.179, M.181, A.191, D.192 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.44, B:V.52, B:L.122, B:F.124 Hydrogen bonds: B:P.123, B:M.125, B:D.129 Halogen bonds: B:N.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gajiwala, K.S. et al., The Axl kinase domain in complex with a macrocyclic inhibitor offers first structural insights into an active TAM receptor kinase. J. Biol. Chem. (2017)

Release Date

2017-07-26

Peptides

Tyrosine-protein kinase Mer: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosine-protein kinase Mer