SMTL ID : 5u73.1

Crystal structure of human Niemann-Pick C1 protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.35 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.476, N.478, T.536 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.2: 7 residues within 4Å: Chain A: K.417, D.428, P.430, D.551, N.554, N.556, N.557 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.428 NAG-NAG-MAN.3: 7 residues within 4Å: Chain A: Y.550, D.551, D.552, H.884, Q.928, D.930, N.931 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.552, A:D.551

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain A: N.452 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.452 NAG.5: 1 residues within 4Å: Chain A: N.459 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.459 NAG.6: 2 residues within 4Å: Chain A: N.524, H.530 No protein-ligand interaction detected (PLIP) NAG.7: 4 residues within 4Å: Chain A: Q.438, Q.442, P.597, N.598 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.438, A:Q.442 NAG.8: 2 residues within 4Å: Chain A: N.916 Ligands: NAG.11 No protein-ligand interaction detected (PLIP) NAG.9: 2 residues within 4Å: Chain A: N.961, P.974 No protein-ligand interaction detected (PLIP) NAG.10: 3 residues within 4Å: Chain A: Y.475, N.968, N.1006 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.1006 NAG.11: 4 residues within 4Å: Chain A: Q.922, N.1064, E.1067 Ligands: NAG.8 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.1067 Hydrogen bonds: A:Q.922

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, X. et al., 3.3 angstrom structure of Niemann-Pick C1 protein reveals insights into the function of the C-terminal luminal domain in cholesterol transport. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-09-27

Peptides

Niemann-Pick C1 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Niemann-Pick C1 protein

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