SMTL ID : 5u7l.2 (2 other biounits)

PDE2 catalytic domain complexed with inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

monomer

Ligands

1 x 7Y4: (3R)-1-{3-[5-(4-ethylphenyl)-1-methyl-1H-pyrazol-4-yl]-1-methyl-1H-pyrazolo[3,4-d]pyrimidin-4-yl}-N,N-dimethylpyrrolidin-3-amine(Non-covalent)

7Y4.1: 12 residues within 4Å: Chain A: Y.81, H.82, T.194, T.231, D.234, L.235, Q.238, I.252, M.273, Q.285, F.288, I.296 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:T.231, A:L.235, A:I.252, A:F.288, A:I.296 Hydrogen bonds: A:Q.238, A:Q.285 pi-Stacking: A:F.288

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.86, H.122, D.123, D.234 Ligands: MG.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.86, A:H.122, A:D.123, A:D.234

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: D.123 Ligands: ZN.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.123, H2O.1, H2O.1, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Helal, C.J. et al., Application of Structure-Based Design and Parallel Chemistry to Identify a Potent, Selective, and Brain Penetrant Phosphodiesterase 2A Inhibitor. J. Med. Chem. (2017)

Release Date

2017-06-28

Peptides

cGMP-dependent 3',5'-cyclic phosphodiesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

cGMP-dependent 3',5'-cyclic phosphodiesterase

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