SMTL ID : 5u7v.1

Crystal structure of a nucleoside triphosphate diphosphohydrolase (NTPDase) from the legume Trifolium repens in complex with AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 7 residues within 4Å: Chain A: G.14, S.15, T.16, R.19, Y.303, D.307, F.350 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.15, A:T.16, A:T.16, A:D.307 Water bridges: A:R.211, A:R.211, A:Y.303 Salt bridges: A:R.19 pi-Stacking: A:Y.303, A:F.350

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Summers, E.L. et al., Structures and kinetics for plant nucleoside triphosphate diphosphohydrolases support a domain motion catalytic mechanism. Protein Sci. (2017)

Release Date

2017-05-31

Peptides

Apyrase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Apyrase

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