SMTL ID : 5u8o.1 (1 other biounit)

Crystal Structure of Beta-lactamase domain protein, from Burkholderia multivorans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.102, H.104, H.213, D.232 Ligands: ZN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.102, A:H.104, A:H.213, A:D.232, H2O.2 ZN.2: 5 residues within 4Å: Chain A: D.106, H.107, D.232, H.277 Ligands: ZN.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.106, A:H.107, A:D.232, A:H.277, H2O.2 ZN.5: 5 residues within 4Å: Chain B: H.102, H.104, H.213, D.232 Ligands: ZN.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.102, B:H.104, B:H.213, B:D.232, H2O.6 ZN.6: 5 residues within 4Å: Chain B: D.106, H.107, D.232, H.277 Ligands: ZN.5 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.106, B:H.107, B:D.232, B:D.232, B:H.277

2 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 2 residues within 4Å: Chain A: H.213, N.241 No protein-ligand interaction detected (PLIP) UNX.7: 2 residues within 4Å: Chain B: H.213, N.241 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 5 residues within 4Å: Chain A: L.131, G.132, E.216 Chain B: G.132, E.216 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 2 residues within 4Å: Chain B: W.128, R.190 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seattle Structural Genomics Center for Infectious Disease (SSGCID) et al., Crystal Structure of Beta-lactamase domain protein, from Burkholderia multivorans. to be published

Release Date

2017-01-25

Peptides

Zn-dependent hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Zn-dependent hydrolase

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