- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.79 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
NAI.2: 25 residues within 4Å:- Chain A: K.61, I.161, I.190, G.191, A.192, G.193, V.194, I.195, G.196, E.198, L.213, E.214, A.215, L.216, V.248, A.279, V.280, G.281, R.282, M.328, L.329, V.359, I.360, Y.361
- Ligands: FAD.1
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:V.194, A:V.194, A:I.195
- Hydrogen bonds: A:V.194, A:I.195, A:E.198, A:A.215, A:A.279, A:G.281
- Water bridges: A:A.192, A:G.193, A:G.196, A:E.214, A:L.220, A:V.280, A:R.282, A:V.359, A:V.359
NAI.10: 28 residues within 4Å:- Chain B: K.61, I.161, P.163, I.190, G.191, A.192, G.193, V.194, I.195, G.196, E.198, L.213, E.214, A.215, L.216, A.246, R.247, V.248, A.279, V.280, G.281, R.282, M.328, L.329, V.359, I.360, Y.361
- Ligands: FAD.9
18 PLIP interactions:18 interactions with chain B- Hydrophobic interactions: B:V.194, B:V.194, B:I.195
- Hydrogen bonds: B:G.191, B:G.193, B:I.195, B:G.196, B:E.198, B:A.215, B:L.216, B:V.248, B:V.248, B:A.279, B:G.281
- Water bridges: B:V.194, B:V.280, B:R.282, B:V.359
- 9 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.3: 11 residues within 4Å:- Chain A: P.17, Y.20, V.21, C.52, A.330, H.331, S.334
- Chain B: H.454, E.459, H.474
- Ligands: DMS.13
1 PLIP interactions:1 interactions with chain B- pi-Cation interactions: B:H.454
DMS.4: 7 residues within 4Å:- Chain A: Y.39, G.50, T.51, N.54, V.55, S.156
- Ligands: FAD.1
No protein-ligand interaction detected (PLIP)DMS.5: 5 residues within 4Å:- Chain A: P.162, P.163, A.250, S.251, E.252
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.251
DMS.6: 10 residues within 4Å:- Chain A: Y.68, H.71, E.72, A.76, H.80, H.363, A.399, N.400, D.401
- Chain B: K.69
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:H.363
- Water bridges: A:T.402
- Salt bridges: A:E.72, A:D.401
DMS.7: 12 residues within 4Å:- Chain A: F.388, A.392, S.393, G.394, R.395, H.454, E.459, E.463, H.474
- Chain B: Y.20, L.105
- Ligands: DMS.8
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.394
- Salt bridges: A:E.459
- pi-Cation interactions: A:H.474
DMS.8: 11 residues within 4Å:- Chain A: H.454, E.459, H.474
- Chain B: P.17, Y.20, V.21, L.53, A.330, H.331, S.334
- Ligands: DMS.7
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- pi-Cation interactions: A:H.454
- Hydrogen bonds: B:S.334
DMS.11: 7 residues within 4Å:- Chain B: Y.39, G.50, T.51, N.54, V.55, S.156
- Ligands: FAD.9
No protein-ligand interaction detected (PLIP)DMS.12: 4 residues within 4Å:- Chain B: N.400, D.401, T.402, T.403
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.402, B:T.403, B:T.403
DMS.13: 12 residues within 4Å:- Chain A: Y.20, L.105
- Chain B: F.388, A.392, S.393, G.394, R.395, H.454, E.459, E.463, H.474
- Ligands: DMS.3
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:G.394, B:R.395
- Water bridges: B:E.459
- Salt bridges: B:E.459
- pi-Cation interactions: B:H.474
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Glasser, N.R. et al., The Pyruvate and alpha-Ketoglutarate Dehydrogenase Complexes of Pseudomonas aeruginosa Catalyze Pyocyanin and Phenazine-1-carboxylic Acid Reduction via the Subunit Dihydrolipoamide Dehydrogenase. J. Biol. Chem. (2017)
- Release Date
- 2017-02-15
- Peptides
- Dihydrolipoyl dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.79 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- 9 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Glasser, N.R. et al., The Pyruvate and alpha-Ketoglutarate Dehydrogenase Complexes of Pseudomonas aeruginosa Catalyze Pyocyanin and Phenazine-1-carboxylic Acid Reduction via the Subunit Dihydrolipoamide Dehydrogenase. J. Biol. Chem. (2017)
- Release Date
- 2017-02-15
- Peptides
- Dihydrolipoyl dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D