SMTL ID : 5ubk.1

Inactive S1A/N269D-cpPvdQ mutant in complex with the pyoverdine precursor PVDIq reveals a specific binding pocket for the D-Tyr of this substrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x 83M: N-[(1R)-1-{(6S)-6-[(2-amino-2-oxoethyl)carbamoyl]-1,4,5,6-tetrahydropyrimidin-2-yl}-2-(4-hydroxyphenyl)ethyl]-N~2~-tetradecanoyl-L-glutamine(Non-covalent)

83M.1: 20 residues within 4Å: Chain A: A.1, P.22, H.23, F.24, F.32, L.53, N.57, H.68, V.70, V.158, W.162, V.187, S.268, D.269, G.295, P.296, R.297, G.456, H.457, L.687 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:A.1, A:P.22, A:F.24, A:F.24, A:F.32, A:L.53, A:N.57, A:H.68, A:V.70, A:V.158, A:W.162, A:W.162, A:W.162, A:V.187, A:L.687 Hydrogen bonds: A:A.1, A:H.23, A:S.268, A:R.297, A:R.297, A:A.298 pi-Cation interactions: A:R.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mascarenhas, R. et al., Circular Permutation Reveals a Chromophore Precursor Binding Pocket of the Siderophore Tailoring Enzyme PvdQ. To Be Published

Release Date

2017-03-01

Peptides

Acyl-homoserine lactone acylase PvdQ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Acyl-homoserine lactone acylase PvdQ