- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.44 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NA: SODIUM ION(Non-functional Binders)
- 6 x ZN: ZINC ION(Non-covalent)
ZN.2: 7 residues within 4Å:- Chain A: H.83, M.102, E.134, H.180, H.210
- Ligands: ZN.3, ZN.4
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.83, A:E.134, A:E.134, A:H.210, H2O.1
ZN.3: 6 residues within 4Å:- Chain A: H.83, H.180, H.210
- Ligands: ZN.2, ZN.4, P6F.5
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:H.83, A:H.180, A:H.210
ZN.4: 7 residues within 4Å:- Chain A: H.83, H.180, H.210, N.253
- Ligands: ZN.2, ZN.3, P6F.5
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:H.83, A:H.83, A:H.180
ZN.7: 7 residues within 4Å:- Chain B: H.83, M.102, E.134, H.180, H.210
- Ligands: ZN.8, ZN.9
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.83, B:E.134, B:E.134, B:H.210, H2O.13
ZN.8: 6 residues within 4Å:- Chain B: H.83, H.180, H.210
- Ligands: ZN.7, ZN.9, 13P.10
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:H.83, B:H.180, B:H.210
ZN.9: 9 residues within 4Å:- Chain B: H.83, H.180, H.210, G.211, N.253
- Ligands: ZN.7, ZN.8, 13P.10, G3H.11
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:H.83, B:H.83, B:H.180
- 1 x P6F: 1,6-di-O-phosphono-D-fructose(Non-covalent)
P6F.5: 22 residues within 4Å:- Chain A: N.23, Q.47, S.49, A.52, D.82, H.83, H.180, G.181, K.184, H.210, G.211, A.212, S.213, N.253, T.254, D.255, T.256, D.257, R.259
- Chain B: R.280
- Ligands: ZN.3, ZN.4
25 PLIP interactions:24 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Q.47, A:S.49, A:D.82, A:H.83, A:H.180, A:G.181, A:G.211, A:A.212, A:S.213, A:S.213, A:S.213, A:S.213, A:N.253, A:D.255, A:D.255, A:T.256, A:T.256, A:R.259
- Water bridges: A:N.23, A:E.50, A:E.50, A:D.255
- Salt bridges: A:K.184, A:R.259, B:R.280
- 1 x 13P: 1,3-DIHYDROXYACETONEPHOSPHATE(Non-covalent)
13P.10: 19 residues within 4Å:- Chain B: N.23, Q.47, D.82, H.83, H.180, G.181, K.184, H.210, G.211, A.212, S.213, N.253, T.254, D.255, T.256, D.257
- Ligands: ZN.8, ZN.9, G3H.11
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:D.82, B:H.83, B:G.181, B:G.211, B:A.212, B:S.213, B:S.213, B:S.213, B:N.253, B:D.255, B:T.256, B:T.256, B:T.256
- Salt bridges: B:K.184
- 1 x G3H: GLYCERALDEHYDE-3-PHOSPHATE(Non-covalent)
G3H.11: 12 residues within 4Å:- Chain A: R.280
- Chain B: N.23, S.49, G.51, A.52, D.82, H.83, H.180, D.255, R.259
- Ligands: ZN.9, 13P.10
10 PLIP interactions:7 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:S.49, B:H.83
- Water bridges: B:N.23, B:G.51, B:R.259, B:R.259, A:R.280, A:R.280
- Salt bridges: B:R.259, A:R.280
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jacques, B. et al., Active site remodeling during the catalytic cycle in metal-dependent fructose-1,6-bisphosphate aldolases. J. Biol. Chem. (2018)
- Release Date
- 2018-04-11
- Peptides
- Fructose-bisphosphate aldolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.44 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NA: SODIUM ION(Non-functional Binders)
- 6 x ZN: ZINC ION(Non-covalent)
- 1 x P6F: 1,6-di-O-phosphono-D-fructose(Non-covalent)
- 1 x 13P: 1,3-DIHYDROXYACETONEPHOSPHATE(Non-covalent)
- 1 x G3H: GLYCERALDEHYDE-3-PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jacques, B. et al., Active site remodeling during the catalytic cycle in metal-dependent fructose-1,6-bisphosphate aldolases. J. Biol. Chem. (2018)
- Release Date
- 2018-04-11
- Peptides
- Fructose-bisphosphate aldolase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B