SMTL ID : 5ue2.1

proMMP-7 with heparin octasaccharide bridging between domains

Coordinates

PDB Format

Method

SOLUTION NMR

Oligo State

monomer

Ligands

1 x SGN- IDS- SGN- IDS- SGN- IDS- SGN- IDS: 2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose

SGN-IDS-SGN-IDS-SGN-IDS-SGN-IDS.1: 15 residues within 4Å: Chain A: E.13, Q.14, D.17, Y.18, K.20, R.21, Y.25, K.30, R.140, F.149, D.150, G.151, P.152, N.154, D.175 No protein-ligand interaction detected (PLIP)

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 9 residues within 4Å: Chain A: W.84, D.133, I.134, M.135, G.165, L.166, G.167, G.168, D.169 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.133, A:G.165, A:L.166, A:G.167, A:D.169 CA.3: 9 residues within 4Å: Chain A: F.149, D.150, G.151, P.152, G.153, N.154, T.155, D.173, E.176 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.150, A:G.151, A:T.155, A:D.173, A:E.176

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 5 residues within 4Å: Chain A: H.143, D.145, H.158, F.160, H.171 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.143, A:D.145, A:H.158, A:H.171 ZN.5: 5 residues within 4Å: Chain A: C.67, V.69, H.194, H.198, H.204 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.67, A:H.194, A:H.198, A:H.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fulcher, Y.G. et al., Glycan Activation of a Sheddase: Electrostatic Recognition between Heparin and proMMP-7. Structure (2017)

Release Date

2017-07-19

Peptides

Matrilysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Matrilysin

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