SMTL ID : 5uei.1

Crystal Structure of Variable Lymphocyte Receptor (VLR) O13 (Apo)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: G.116, L.138, M.139, C.140, A.161 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: A.229, G.230 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.230 Water bridges: A:C.228, A:C.228, A:T.231 GOL.3: 4 residues within 4Å: Chain A: F.187, G.188, S.225, K.227 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.188, A:S.225 Water bridges: A:G.188, A:N.189, A:G.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collins, B.C. et al., Structural Insights into VLR Fine Specificity for Blood Group Carbohydrates. Structure (2017)

Release Date

2017-10-18

Peptides

O13: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

O13