SMTL ID : 5uf4.1 (2 other biounits)

Crystal Structure of Variable Lymphocyte Receptor (VLR) O13 with LNnT bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

1 x GLC- GAL- NAG- GAL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose

GLC-GAL-NAG-GAL.1: 17 residues within 4Å: Chain A: K.23, S.24, D.45, W.66, N.68, N.69, A.90, D.92, Y.114, L.138, C.140, A.161, D.163, Q.164, Y.185, F.187, W.215 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.163, A:Q.164, A:K.23, A:S.24, A:S.24, A:D.92 Water bridges: A:Q.164, A:Y.185, A:Y.185, A:N.44, A:N.68, A:W.215 Salt bridges: A:K.23 Hydrophobic interactions: A:W.66, A:A.90, A:Y.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collins, B.C. et al., Structural Insights into VLR Fine Specificity for Blood Group Carbohydrates. Structure (2017)

Release Date

2017-10-18

Peptides

O13: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

O13

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