SMTL ID : 5ufc.2 (2 other biounits)

Crystal Structure of Variable Lymphocyte Receptor (VLR) Tn4-22 with H-trisaccharide bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

1 x NAG- GAL- FUC: alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-GAL-FUC.1: 15 residues within 4Å: Chain A: S.90, D.92, E.93, Y.112, N.114, N.116, T.117, C.140, C.141, A.161, D.163, Q.164, Y.185, F.187, W.215 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.164, A:Q.164, A:N.116, A:D.163, A:Q.164, A:D.92, A:Y.112, A:N.114, A:N.116 Water bridges: A:T.117, A:Y.185, A:Y.185, A:D.92, A:W.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collins, B.C. et al., Structural Insights into VLR Fine Specificity for Blood Group Carbohydrates. Structure (2017)

Release Date

2017-10-18

Peptides

Tn4-22: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Tn4-22

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