SMTL ID : 5ug0.1

Human antibody H2897 in complex with influenza hemagglutinin H1 Solomon Islands/03/2006

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

6 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 7 residues within 4Å: Chain A: N.65, E.67, E.87, N.88, C.91, S.137, R.221 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.221 NAG-NAG-BMA.3: 3 residues within 4Å: Chain A: N.160, Y.198 Chain E: R.189 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:R.189, E:R.189 NAG-NAG-BMA.9: 7 residues within 4Å: Chain E: N.65, E.67, E.87, N.88, C.91, S.137, R.221 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:R.221 NAG-NAG-BMA.11: 3 residues within 4Å: Chain E: N.160, Y.198 Chain I: R.189 2 PLIP interactions: 2 interactions with chain I Hydrogen bonds: I:R.189, I:R.189 NAG-NAG-BMA.17: 7 residues within 4Å: Chain I: N.65, E.67, E.87, N.88, C.91, S.137, R.221 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:R.221 NAG-NAG-BMA.19: 3 residues within 4Å: Chain A: R.189 Chain I: N.160, Y.198 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.189, A:R.189

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: P.125, N.126, S.162, K.163 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.162 NAG-NAG.10: 4 residues within 4Å: Chain E: P.125, N.126, S.162, K.163 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:S.162 NAG-NAG.18: 4 residues within 4Å: Chain I: P.125, N.126, S.162, K.163 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:S.162

15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-functional Binders)

NAG.4: 2 residues within 4Å: Chain A: N.55, E.87 Ligand excluded by PLIP NAG.5: 3 residues within 4Å: Chain A: N.11, N.12 Ligands: NAG.7 Ligand excluded by PLIP NAG.6: 2 residues within 4Å: Chain A: T.16, N.24 Ligand excluded by PLIP NAG.7: 1 residues within 4Å: Ligands: NAG.5 Ligand excluded by PLIP NAG.8: 3 residues within 4Å: Chain B: E.147, N.154, T.156 Ligand excluded by PLIP NAG.12: 2 residues within 4Å: Chain E: N.55, E.87 Ligand excluded by PLIP NAG.13: 3 residues within 4Å: Chain E: N.11, N.12 Ligands: NAG.15 Ligand excluded by PLIP NAG.14: 2 residues within 4Å: Chain E: T.16, N.24 Ligand excluded by PLIP NAG.15: 1 residues within 4Å: Ligands: NAG.13 Ligand excluded by PLIP NAG.16: 3 residues within 4Å: Chain F: E.147, N.154, T.156 Ligand excluded by PLIP NAG.20: 2 residues within 4Å: Chain I: N.55, E.87 Ligand excluded by PLIP NAG.21: 3 residues within 4Å: Chain I: N.11, N.12 Ligands: NAG.23 Ligand excluded by PLIP NAG.22: 2 residues within 4Å: Chain I: T.16, N.24 Ligand excluded by PLIP NAG.23: 1 residues within 4Å: Ligands: NAG.21 Ligand excluded by PLIP NAG.24: 3 residues within 4Å: Chain J: E.147, N.154, T.156 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., CryoEM Structure of an Influenza Virus Receptor-Binding Site Antibody-Antigen Interface. J. Mol. Biol. (2017)

Release Date

2017-05-31

Peptides

Hemagglutinin HA1: AEI
Hemagglutinin HA2: BFJ
2897 light chain: CGK
2897 heavy chain: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

B
B

F
B

J
B

C
C

G
C

K
C

D
D

H
D

L
D

Hemagglutinin HA1

Hemagglutinin HA2

2897 light chain

2897 heavy chain

Related Entries With Identical Sequence