SMTL ID : 5ugy.1

Influenza hemagglutinin in complex with a neutralizing antibody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: G.54, N.55, E.87 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 5 residues within 4Å: Chain A: V.31, N.287, S.289, L.290 Chain B: I.56 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain C: G.54, N.55, E.87 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 5 residues within 4Å: Chain C: V.31, N.287, S.289, L.290 Chain D: I.56 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 4 residues within 4Å: Chain E: G.54, N.55, E.87 Ligands: NAG-NAG-BMA.8 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 5 residues within 4Å: Chain E: V.31, N.287, S.289, L.290 Chain F: I.56 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 9 residues within 4Å: Chain A: N.65, P.66, E.67, E.87, N.88, C.91, C.136, S.137, R.221 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.221 NAG-NAG-BMA.5: 9 residues within 4Å: Chain C: N.65, P.66, E.67, E.87, N.88, C.91, C.136, S.137, R.221 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.221 NAG-NAG-BMA.8: 10 residues within 4Å: Chain E: N.65, P.66, E.67, E.87, N.88, C.91, C.136, S.137, R.221 Ligands: NAG-NAG.7 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:R.221

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.10: 2 residues within 4Å: Chain A: P.125, N.126 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.126 NAG.11: 2 residues within 4Å: Chain A: P.159, N.160 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.159 NAG.12: 2 residues within 4Å: Chain C: P.125, N.126 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.126 NAG.13: 2 residues within 4Å: Chain C: P.159, N.160 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:P.159 NAG.14: 2 residues within 4Å: Chain E: P.125, N.126 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.126 NAG.15: 2 residues within 4Å: Chain E: P.159, N.160 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:P.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Whittle, J.R. et al., Broadly neutralizing human antibody that recognizes the receptor-binding pocket of influenza virus hemagglutinin. Proc. Natl. Acad. Sci. U.S.A. (2011)

Release Date

2017-01-25

Peptides

Hemagglutinin HA1: ACE
Hemagglutinin HA2: BDF
CH65 heavy chain: GHI
CH65 light chain: JKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

G
H

H
I

I
J

J
L

K
M

L
N

Hemagglutinin HA1

Hemagglutinin HA2

CH65 heavy chain

CH65 light chain

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