SMTL ID : 5uhk.1

Crystal structure of the core catalytic domain of Human O-GlcNAcase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.97 Å

Oligo State

hetero-2-2-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: D.119, Y.164, T.195, W.223, N.225 Ligands: GOL.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.225 GOL.2: 8 residues within 4Å: Chain A: G.12, F.13, K.43, N.225, D.230, Y.231, N.258 Ligands: GOL.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.12, A:K.43, A:K.43, A:N.258 GOL.3: 9 residues within 4Å: Chain C: G.12, K.43, D.119, D.120, C.160, Y.164, T.195, W.223, N.225 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.12, C:N.225, C:N.225

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elsen, N.L. et al., Crystal structure of the core catalytic domain of human O-GlcNAcase and molecular basis of activity and inhibition. To Be Published

Release Date

2017-03-29

Peptides

O-GlcNAcase TIM-barrel domain: AC
O-GlcNAcase stalk domain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

O-GlcNAcase TIM-barrel domain

O-GlcNAcase stalk domain

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