SMTL ID : 5uhl.1

Crystal structure of the core catalytic domain of human O-GlcNAcase complexed with Thiamet G

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.14 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 8BJ: (2Z,3aR,5R,6S,7R,7aR)-2-(ethylimino)-5-(hydroxymethyl)hexahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol(Non-covalent)

8BJ.1: 16 residues within 4Å: Chain A: G.12, F.13, Y.14, K.43, D.119, D.120, C.160, Y.164, T.195, V.199, W.223, N.225, A.228, D.230, Y.231, N.258 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:T.195, A:W.223 Hydrogen bonds: A:G.12, A:D.119, A:D.119, A:D.230, A:N.258 8BJ.2: 16 residues within 4Å: Chain C: G.12, F.13, Y.14, K.43, D.119, D.120, C.160, Y.164, T.195, V.199, W.223, N.225, A.228, D.230, Y.231, N.258 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:T.195, C:W.223 Hydrogen bonds: C:G.12, C:D.119, C:D.230, C:N.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elsen, N.L. et al., Crystal structure of the core catalytic domain of human O-GlcNAcase and molecular basis of activity and inhibition. To Be Published

Release Date

2017-03-29

Peptides

O-GlcNAcase TIM-barrel domain: AC
O-GlcNAcase stalk domain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

O-GlcNAcase TIM-barrel domain

O-GlcNAcase stalk domain

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