SMTL ID : 5uho.1

Crystal structure of the core catalytic domain of human O-GlcNAcase complexed with PUGNAc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.21 Å

Oligo State

hetero-2-2-mer

Ligands

2 x OAN: O-(2-ACETAMIDO-2-DEOXY D-GLUCOPYRANOSYLIDENE) AMINO-N-PHENYLCARBAMATE(Non-covalent)

OAN.1: 14 residues within 4Å: Chain A: G.12, F.13, Y.14, K.43, D.119, D.120, Y.164, T.195, V.199, W.223, N.225, D.230, Y.231, N.258 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.195, A:V.199, A:W.223, A:Y.231, A:Y.231 Hydrogen bonds: A:G.12, A:K.43, A:D.119, A:N.225, A:D.230, A:N.258 OAN.2: 15 residues within 4Å: Chain C: G.12, F.13, Y.14, K.43, D.119, D.120, C.160, Y.164, T.195, V.199, W.223, N.225, D.230, Y.231, N.258 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:D.119, C:Y.164, C:T.195, C:V.199, C:W.223, C:Y.231 Hydrogen bonds: C:G.12, C:D.119, C:D.119, C:Y.164, C:N.225

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elsen, N.L. et al., Crystal structure of the core catalytic domain of human O-GlcNAcase and molecular basis of activity and inhibition. To Be Published

Release Date

2017-03-29

Peptides

O-GlcNAcase TIM-barrel domain: AC
O-GlcNAcase stalk domain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

O-GlcNAcase TIM-barrel domain

O-GlcNAcase stalk domain

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