SMTL ID : 5uiw.1

Crystal Structure of CC Chemokine Receptor 5 (CCR5) in complex with high potency HIV entry inhibitor 5P7-CCL5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.231, C.234, C.264, C.267 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.231, A:C.234, A:C.264, A:C.267

6 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 4 residues within 4Å: Chain A: F.191, N.194, F.195, L.198 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.195 OLC.3: 5 residues within 4Å: Chain A: P.86, F.87, H.90, F.98 Ligands: OLC.6 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.86, A:P.86, A:F.87 Hydrogen bonds: A:H.90 OLC.4: 11 residues within 4Å: Chain A: F.298, L.299, A.302, I.306, V.307, L.310, L.319, S.324, R.327, L.328, A.331 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.299, A:A.302, A:I.306, A:V.307, A:A.331 Hydrogen bonds: A:S.324, A:R.327 OLC.5: 4 residues within 4Å: Chain A: L.299, Q.330, A.331, T.335 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.335 Hydrogen bonds: A:Q.330 OLC.6: 5 residues within 4Å: Chain A: S.40, F.43, P.86, H.90 Ligands: OLC.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.43 Hydrogen bonds: A:H.90 OLC.7: 7 residues within 4Å: Chain A: N.26, I.30, L.34, L.35, Q.330, Q.333, L.338 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.30, A:L.34, A:L.35, A:Q.330, A:Q.333, A:L.338

2 x OLA: OLEIC ACID(Non-covalent)

OLA.8: 3 residues within 4Å: Chain A: R.288, I.345 Ligands: OLA.9 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.345 Salt bridges: A:R.288 OLA.9: 4 residues within 4Å: Chain A: T.292, I.295, L.299 Ligands: OLA.8 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.295, A:L.299 Hydrogen bonds: A:T.292

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zheng, Y. et al., Structure of CC Chemokine Receptor 5 with a Potent Chemokine Antagonist Reveals Mechanisms of Chemokine Recognition and Molecular Mimicry by HIV. Immunity (2017)

Release Date

2017-06-28

Peptides

C-C chemokine receptor type 5,Rubredoxin chimera: A
C-C motif chemokine 5: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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C-C chemokine receptor type 5,Rubredoxin chimera

C-C motif chemokine 5