SMTL ID : 5uj7.2 (1 other biounit)

Structure of the active form of human Origin Recognition Complex ATPase motor module, complex subunitS 1, 4, 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.39 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 19 residues within 4Å: Chain A: V.30, P.31, E.32, C.36, P.66, G.67, T.68, G.69, K.70, T.71, A.72, E.151, N.184, Y.211, I.219, R.250, L.253 Chain B: R.209 Ligands: MG.2 18 PLIP interactions: 17 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:V.30, A:E.32, A:C.36, A:T.68, A:G.69, A:K.70, A:T.71, A:A.72, A:E.151, A:N.184, A:Y.211, A:Y.211 Salt bridges: A:K.70, A:K.70, A:R.250, A:R.250, A:R.250, B:R.209 ATP.3: 18 residues within 4Å: Chain B: Q.31, N.36, L.37, F.38, V.40, P.68, R.69, G.70, S.71, G.72, K.73, T.74, M.75, L.276, R.277, H.280 Chain C: R.143 Ligands: MG.4 14 PLIP interactions: 13 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:Q.31, B:F.38, B:F.38, B:G.70, B:S.71, B:G.72, B:T.74, B:T.74, B:M.75 Salt bridges: B:R.69, B:K.73, B:K.73, B:R.277, C:R.143 ATP.5: 15 residues within 4Å: Chain C: H.38, T.39, A.40, S.41, G.42, K.43, T.44, Y.45, D.125, K.126, E.159, Y.182, I.190, L.222, R.226 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:H.38, C:T.39, C:G.42, C:K.43, C:T.44, C:Y.45, C:Y.182 Salt bridges: C:K.43, C:K.43, C:K.126 pi-Stacking: C:Y.45, C:Y.45

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.71, D.150, E.151 Ligands: ATP.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:T.71, A:D.150, A:D.150 MG.4: 4 residues within 4Å: Chain B: T.74, D.159 Chain C: R.143 Ligands: ATP.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.74

1 x K: POTASSIUM ION(Non-covalent)

K.6: 5 residues within 4Å: Chain C: F.22, E.24, H.27, F.28, T.119 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:F.22, C:E.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tocilj, A. et al., Structure of the active form of human Origin Recognition Complex and its ATPase motor module. Elife (2017)

Release Date

2017-02-08

Peptides

Origin recognition complex subunit 1: A
Origin recognition complex subunit 4: B
Origin recognition complex subunit 5: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
F

Origin recognition complex subunit 1

Origin recognition complex subunit 4

Origin recognition complex subunit 5

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