SMTL ID : 5uk2.1

CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 4

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 13 residues within 4Å: Chain A: N.65, P.66, E.67, E.87, N.88, G.89, C.91, S.135, C.136, S.137, R.221, D.222 Ligands: NAG-NAG.2 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.3: 13 residues within 4Å: Chain C: N.65, P.66, E.67, E.87, N.88, G.89, C.91, S.135, C.136, S.137, R.221, D.222 Ligands: NAG-NAG.4 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.5: 13 residues within 4Å: Chain E: N.65, P.66, E.67, E.87, N.88, G.89, C.91, S.135, C.136, S.137, R.221, D.222 Ligands: NAG-NAG.6 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain A: G.54, N.55, E.87 Ligands: NAG-NAG-BMA.1 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain C: G.54, N.55, E.87 Ligands: NAG-NAG-BMA.3 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 4 residues within 4Å: Chain E: G.54, N.55, E.87 Ligands: NAG-NAG-BMA.5 No protein-ligand interaction detected (PLIP)

18 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 4 residues within 4Å: Chain A: S.123, W.124, P.125, N.126 Ligand excluded by PLIP NAG.8: 3 residues within 4Å: Chain A: P.159, N.160, Y.198 Ligand excluded by PLIP NAG.9: 1 residues within 4Å: Chain A: N.12 Ligand excluded by PLIP NAG.10: 2 residues within 4Å: Chain A: K.23, N.24 Ligand excluded by PLIP NAG.11: 3 residues within 4Å: Chain A: N.287, S.289, L.290 Ligand excluded by PLIP NAG.12: 5 residues within 4Å: Chain B: E.147, E.150, S.151, N.154, T.156 Ligand excluded by PLIP NAG.13: 4 residues within 4Å: Chain C: S.123, W.124, P.125, N.126 Ligand excluded by PLIP NAG.14: 3 residues within 4Å: Chain C: P.159, N.160, Y.198 Ligand excluded by PLIP NAG.15: 1 residues within 4Å: Chain C: N.12 Ligand excluded by PLIP NAG.16: 2 residues within 4Å: Chain C: K.23, N.24 Ligand excluded by PLIP NAG.17: 3 residues within 4Å: Chain C: N.287, S.289, L.290 Ligand excluded by PLIP NAG.18: 5 residues within 4Å: Chain D: E.147, E.150, S.151, N.154, T.156 Ligand excluded by PLIP NAG.19: 4 residues within 4Å: Chain E: S.123, W.124, P.125, N.126 Ligand excluded by PLIP NAG.20: 3 residues within 4Å: Chain E: P.159, N.160, Y.198 Ligand excluded by PLIP NAG.21: 1 residues within 4Å: Chain E: N.12 Ligand excluded by PLIP NAG.22: 2 residues within 4Å: Chain E: K.23, N.24 Ligand excluded by PLIP NAG.23: 3 residues within 4Å: Chain E: N.287, S.289, L.290 Ligand excluded by PLIP NAG.24: 5 residues within 4Å: Chain F: E.147, E.150, S.151, N.154, T.156 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., CryoEM Structure of an Influenza Virus Receptor-Binding Site Antibody-Antigen Interface. J. Mol. Biol. (2017)

Release Date

2017-05-31

Peptides

Hemagglutinin HA1: ACE
Hemagglutinin HA2: BDF
scFv: GHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

G
G

H
H

I
I

Hemagglutinin HA1

Hemagglutinin HA2

scFv

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