SMTL ID : 5ukf.1 (3 other biounits)

Crystal Structure of the Human Vaccinia-related Kinase 1 Bound to an Oxindole Inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x 8E1: 4-{[(Z)-(7-oxo-6,7-dihydro-8H-[1,3]thiazolo[5,4-e]indol-8-ylidene)methyl]amino}benzene-1-sulfonamide(Non-covalent)

8E1.1: 13 residues within 4Å: Chain A: F.47, I.50, V.68, M.130, D.131, R.132, F.133, G.134, S.135, D.136, K.139, L.183, V.195 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.68, A:M.130, A:F.133, A:L.183 Hydrogen bonds: A:D.131, A:F.133, A:F.133, A:D.136, A:D.136 pi-Stacking: A:F.47

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 3 residues within 4Å: Chain A: D.119, K.120, N.121 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.121, A:N.121

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: R.147, H.257 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Counago, R.M. et al., Structural characterization of human Vaccinia-Related Kinases (VRK) bound to small-molecule inhibitors identifies different P-loop conformations. Sci Rep (2017)

Release Date

2017-03-29

Peptides

Serine/threonine-protein kinase VRK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase VRK1

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