SMTL ID : 5ukw.1

Crystal structure of human Glucose 6-phosphate Dehydrogenase mutant (A277C) complexed with G6P

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-tetramer

Ligands

4 x BG6: 6-O-phosphono-beta-D-glucopyranose(Non-covalent)

BG6.1: 11 residues within 4Å: Chain A: K.148, H.178, Y.179, K.182, F.214, E.216, D.235, H.240, K.337, R.342, Q.372 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:K.148, A:K.148, A:Y.179, A:Y.179, A:D.235, A:K.337, A:K.337, A:Q.372 Salt bridges: A:K.148, A:H.178, A:H.178, A:K.182, A:H.240, A:R.342 BG6.3: 11 residues within 4Å: Chain B: K.148, H.178, Y.179, K.182, F.214, E.216, D.235, H.240, K.337, R.342, Q.372 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:K.148, B:K.148, B:Y.179, B:D.235, B:K.337, B:K.337, B:Q.372 Salt bridges: B:K.148, B:H.178, B:H.178, B:K.182, B:H.240, B:R.342 BG6.5: 11 residues within 4Å: Chain C: K.148, H.178, Y.179, K.182, F.214, E.216, D.235, H.240, K.337, R.342, Q.372 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:K.148, C:K.148, C:Y.179, C:D.235, C:K.337, C:K.337, C:Q.372 Salt bridges: C:K.148, C:H.178, C:H.178, C:K.182, C:H.240, C:R.342 BG6.7: 11 residues within 4Å: Chain D: K.148, H.178, Y.179, K.182, F.214, E.216, D.235, H.240, K.337, R.342, Q.372 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:K.148, D:K.148, D:Y.179, D:Y.179, D:D.235, D:K.337, D:K.337, D:Q.372 Salt bridges: D:K.148, D:H.178, D:H.178, D:K.182, D:H.240, D:R.342

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: D.205, H.351, D.352 Chain B: R.204 Chain C: R.196 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.205, A:D.352, B:R.204, B:R.204 GOL.4: 5 residues within 4Å: Chain A: R.204 Chain B: D.205, H.351, D.352 Chain D: R.196 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.205, B:D.352, A:R.204, A:R.204 GOL.6: 5 residues within 4Å: Chain A: R.196 Chain C: D.205, H.351, D.352 Chain D: R.204 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:D.205, C:D.352, D:R.204, D:R.204 GOL.8: 5 residues within 4Å: Chain B: R.196 Chain C: R.204 Chain D: D.205, H.351, D.352 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:D.205, D:D.352, C:R.204, C:R.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ranzani, A.T. et al., Mutations in the tetramer interface of human glucose-6-phosphate dehydrogenase reveals kinetic differences between oligomeric states. FEBS Lett. (2017)

Release Date

2017-04-19

Peptides

Glucose-6-phosphate 1-dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Glucose-6-phosphate 1-dehydrogenase