SMTL ID : 5ul2.1

Structure of Apo, SeMet-labeled Cobalamin-dependent S-adenosylmethionine radical enzyme OxsB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

17 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: M.475, L.493, Y.534, M.540, L.541, H.638 Ligand excluded by PLIP EDO.2: 5 residues within 4Å: Chain A: F.320, I.474, S.543, M.544, E.545 Ligand excluded by PLIP EDO.3: 4 residues within 4Å: Chain A: Y.627, M.630, E.631, R.634 Ligand excluded by PLIP EDO.4: 6 residues within 4Å: Chain A: S.463, I.467, N.468, L.469, L.499, T.529 Ligand excluded by PLIP EDO.5: 6 residues within 4Å: Chain A: I.236, C.237, G.263, I.264, S.265, D.324 Ligand excluded by PLIP EDO.6: 4 residues within 4Å: Chain A: F.131, R.470, T.535, I.536 Ligand excluded by PLIP EDO.7: 5 residues within 4Å: Chain A: H.421, I.505, M.508, Y.510 Ligands: EDO.13 Ligand excluded by PLIP EDO.8: 4 residues within 4Å: Chain A: A.618, N.619, E.622, T.714 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: P.220, F.222, D.324 Ligand excluded by PLIP EDO.10: 2 residues within 4Å: Chain A: R.80, S.97 Ligand excluded by PLIP EDO.11: 4 residues within 4Å: Chain A: F.131, S.538, Y.539 Ligands: EDO.16 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain A: G.303, K.355, H.357 Ligand excluded by PLIP EDO.13: 4 residues within 4Å: Chain A: T.509, Y.510 Ligands: EDO.7, EDO.17 Ligand excluded by PLIP EDO.14: 9 residues within 4Å: Chain A: N.124, N.137, L.138, T.140, G.141, L.157, D.159, S.291, I.294 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain A: G.438, S.439, N.440, S.452, E.488 Ligand excluded by PLIP EDO.16: 5 residues within 4Å: Chain A: F.131, F.432, R.470, S.538 Ligands: EDO.11 Ligand excluded by PLIP EDO.17: 5 residues within 4Å: Chain A: V.414, E.415, K.418, Y.510 Ligands: EDO.13 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bridwell-Rabb, J. et al., A B12-dependent radical SAM enzyme involved in oxetanocin A biosynthesis. Nature (2017)

Release Date

2017-04-19

Peptides

OxsB protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

OxsB protein

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