SMTL ID : 5ulj.1 (3 other biounits)

Crystal structure of Scheffersomyces stipitis Rai1 in complex with (3'-NADP)+ and calcium ion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: E.186, D.237, E.256, L.257, K.258 Ligands: 0WD.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.237, A:E.256, A:L.257, H2O.1, H2O.1

1 x 0WD: [[(2R,3S,4R,5R)-5-(3-aminocarbonyl-4H-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate(Non-covalent)

0WD.2: 13 residues within 4Å: Chain A: N.83, M.84, Y.114, R.115, G.116, Y.183, Q.216, A.233, G.234, E.235, K.258, Q.282 Ligands: CA.1 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:N.83, A:G.116, A:Q.216, A:E.235, A:E.235, A:Q.282 Water bridges: A:R.34, A:L.117, A:L.117, A:L.257 Salt bridges: A:R.115, A:R.115, A:K.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiao, X. et al., 5' End Nicotinamide Adenine Dinucleotide Cap in Human Cells Promotes RNA Decay through DXO-Mediated deNADding. Cell (2017)

Release Date

2017-05-17

Peptides

RAI1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RAI1

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