SMTL ID : 5ulu.1

Crystal Structure of Mouse Cadherin-23 EC19-21 (S2087P) with non-syndromic deafness (DFNB12) associated mutation D2148N

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

monomer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.17, D.75, E.77, D.111 Ligands: CA.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.17, A:D.75, A:E.77, H2O.1, H2O.1 CA.2: 8 residues within 4Å: Chain A: E.17, E.77, D.108, D.109, D.111, N.112, D.144 Ligands: CA.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.17, A:D.108, A:D.109, A:D.111, A:D.144 CA.3: 6 residues within 4Å: Chain A: N.110, N.112, D.142, D.144, N.148, N.195 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.112, A:D.142, A:D.142, A:D.144, A:N.148 CA.4: 6 residues within 4Å: Chain A: E.127, N.128, D.180, E.182, D.216 Ligands: CA.5 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.127, A:D.180, A:E.182, A:D.216, A:D.216 CA.5: 7 residues within 4Å: Chain A: E.127, E.182, D.213, I.214, D.216, D.249 Ligands: CA.4 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.127, A:D.213, A:I.214, A:D.216, A:D.249 CA.6: 6 residues within 4Å: Chain A: N.215, S.217, D.247, D.249, D.309, S.312 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:S.217, A:D.247, A:D.247, A:D.249, A:D.309

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jaiganesh, A. et al., Zooming in on Cadherin-23: Structural Diversity and Potential Mechanisms of Inherited Deafness. Structure (2018)

Release Date

2018-01-31

Peptides

Cadherin-23: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cadherin-23