SMTL ID : 5umb.3 (3 other biounits)

Crystal structure of ATPase domain of Malaria GRP78 with ADP bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: E.173, D.195 Ligands: PO4.2, ADP.3 No protein-ligand interaction detected (PLIP)

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: G.10, T.11, K.69, P.145, E.173, T.200 Ligands: MG.1, ADP.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.11, A:T.11 Water bridges: A:K.69, A:K.69, A:T.200, A:T.200, A:D.202 Salt bridges: A:K.69

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 20 residues within 4Å: Chain A: G.10, T.11, T.12, Y.13, G.197, G.198, G.226, E.227, E.264, K.267, R.268, S.271, G.334, G.335, S.336, R.338, I.339, D.362 Ligands: MG.1, PO4.2 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:T.12, A:T.12, A:Y.13, A:G.198, A:E.264, A:K.267, A:R.268, A:S.271, A:G.335 Water bridges: A:D.8, A:D.8, A:Y.13, A:K.69, A:E.173, A:G.199, A:G.199, A:R.338, A:D.362, A:D.362, A:D.362, A:D.362

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y. et al., Repurposing drugs to target the malaria parasite unfolding protein response. Sci Rep (2018)

Release Date

2022-07-27

Peptides

Chaperone DnaK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Chaperone DnaK

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