SMTL ID : 5umn.1 (1 other biounit)

Crystal structure of C05 VPGSGW mutant bound to H3 influenza hemagglutinin, HA1 subunit

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.123, N.204 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.204 NAG.2: 4 residues within 4Å: Chain A: S.3, N.243, V.255, N.256 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.243, A:V.255, A:N.256

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.3: 5 residues within 4Å: Chain A: Q.38, N.91, R.99, S.107, R.213 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.38 Water bridges: A:R.99, A:R.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, N.C. et al., In vitro evolution of an influenza broadly neutralizing antibody is modulated by hemagglutinin receptor specificity. Nat Commun (2017)

Release Date

2017-05-24

Peptides

Hemagglutinin: A
Antibody C05 VPGSGW mutant, heavy chain: B
Antibody C05, light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

C
F

Hemagglutinin

Antibody C05 VPGSGW mutant, heavy chain

Antibody C05, light chain

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