SMTL ID : 5umu.2 (1 other biounit)

Crystal structure of the middle double PH domain of human FACT complex subunit SPT16

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

13 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 8 residues within 4Å: Chain A: L.199, K.249, T.251, W.279, S.280, L.282, E.283 Ligands: ACT.15 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.249, A:E.283 FMT.2: 6 residues within 4Å: Chain A: V.233, A.234, S.235, L.236, D.237, P.238 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.234, A:L.236, A:D.237 FMT.3: 7 residues within 4Å: Chain A: K.20, D.21, L.22, Q.34, G.35, S.36, V.49 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.21, A:G.35, A:S.36 FMT.4: 5 residues within 4Å: Chain A: S.15, N.16, P.17, K.143, L.147 No protein-ligand interaction detected (PLIP) FMT.5: 6 residues within 4Å: Chain A: I.141, E.145, E.153, F.154, V.156 Ligands: FMT.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.145, A:F.154 Water bridges: A:E.153 FMT.6: 5 residues within 4Å: Chain A: F.66, K.138, I.141, V.156 Ligands: FMT.5 No protein-ligand interaction detected (PLIP) FMT.7: 5 residues within 4Å: Chain A: R.91, H.92, T.93, D.94 Ligands: FMT.18 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.93, A:T.93 Water bridges: A:H.92 FMT.8: 4 residues within 4Å: Chain A: Y.168, R.169, S.170, P.188 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.169, A:S.170 Water bridges: A:S.170, A:S.170, A:S.170 FMT.9: 5 residues within 4Å: Chain A: H.201, G.253, L.257, F.281, L.282 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.201 FMT.10: 4 residues within 4Å: Chain A: V.205, L.236, K.240, E.252 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.240 FMT.11: 6 residues within 4Å: Chain A: Y.168, P.189, F.190, V.191, V.192, T.226 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.168, A:V.191 FMT.17: 5 residues within 4Å: Chain A: R.25, R.32, I.74, Y.98, E.100 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.32, A:Y.98 Water bridges: A:R.25, A:R.25, A:R.25 FMT.18: 6 residues within 4Å: Chain A: T.93, D.94, W.187, P.188, P.189 Ligands: FMT.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.93, A:T.93 Water bridges: A:H.80, A:D.94

5 x ACT: ACETATE ION(Non-functional Binders)

ACT.12: 6 residues within 4Å: Chain A: K.53, V.54, D.55, I.85, M.86, F.87 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:D.55 Hydrogen bonds: A:D.55 ACT.13: 4 residues within 4Å: Chain A: R.25, P.26, N.27, W.187 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.27 Water bridges: A:N.27 ACT.14: 2 residues within 4Å: Chain A: D.195, K.219 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.219, A:K.219, A:K.219 Salt bridges: A:K.219 ACT.15: 5 residues within 4Å: Chain A: E.198, L.199, K.249, W.279 Ligands: FMT.1 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.249, A:K.249, A:W.279 Salt bridges: A:K.249 ACT.16: 2 residues within 4Å: Chain A: V.49, R.50 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.49, A:R.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, Q. et al., Crystal structure of the middle double PH domain of human FACT complex subunit SPT16. To Be Published

Release Date

2018-01-31

Peptides

FACT complex subunit SPT16: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

FACT complex subunit SPT16

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