SMTL ID : 5un2.1

Crystal Structure of Mouse Cadherin-23 EC19-21 with non-syndromic deafness (DFNB12) associated mutation R2029W

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.96 Å

Oligo State

monomer

Ligands

8 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.17, D.75, E.77, D.111 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.17, A:D.75, A:E.77, A:D.111 CA.2: 7 residues within 4Å: Chain A: E.17, E.77, D.108, D.109, D.111, N.112, D.144 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.17, A:E.77, A:D.108, A:D.109, A:D.144 CA.3: 6 residues within 4Å: Chain A: N.110, N.112, D.142, D.144, N.148, D.195 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.112, A:D.142, A:D.144, A:N.148, A:D.195 CA.4: 5 residues within 4Å: Chain A: E.127, D.180, E.182, D.216 Ligands: CA.5 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.127, A:D.180, A:E.182, A:D.216, A:D.216 CA.5: 7 residues within 4Å: Chain A: E.127, E.182, D.213, I.214, D.216, D.249 Ligands: CA.4 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.127, A:D.213, A:I.214, A:D.216, A:D.249 CA.6: 7 residues within 4Å: Chain A: N.215, S.217, D.247, D.249, D.309, S.312, H.317 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:S.217, A:D.247, A:D.247, A:D.249, A:D.309 CA.7: 4 residues within 4Å: Chain A: E.232, E.296, D.332, V.333 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.232, A:E.296, A:E.296, A:D.332, A:V.333 CA.8: 3 residues within 4Å: Chain A: E.232, N.294, E.296 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.232, A:E.296

2 x K: POTASSIUM ION(Non-covalent)

K.9: 3 residues within 4Å: Chain A: D.36, D.38, V.41 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.36, A:D.38, A:V.41, H2O.1 K.10: 2 residues within 4Å: Chain A: D.92, I.93 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.92, A:I.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jaiganesh, A. et al., Zooming in on Cadherin-23: Structural Diversity and Potential Mechanisms of Inherited Deafness. Structure (2018)

Release Date

2018-02-07

Peptides

Cadherin-23: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cadherin-23