SMTL ID : 5un9.1

The crystal structure of human O-GlcNAcase in complex with Thiamet-G

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x NHT: (3AR,5R,6S,7R,7AR)-2-(ETHYLAMINO)-5-(HYDROXYMETHYL)-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D][1,3]THIAZOLE-6,7-DIOL

NHT.1: 16 residues within 4Å: Chain A: G.9, F.10, Y.11, K.40, D.116, D.117, C.157, Y.161, T.192, V.196, W.220, N.222, A.225, D.227, Y.228, N.255 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:T.192, A:W.220 Hydrogen bonds: A:G.9, A:Y.11, A:K.40, A:K.40, A:D.116, A:D.227, A:N.255 NHT.2: 16 residues within 4Å: Chain B: G.9, F.10, Y.11, K.40, D.116, D.117, C.157, Y.161, T.192, V.196, W.220, N.222, A.225, D.227, Y.228, N.255 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:T.192, B:W.220 Hydrogen bonds: B:G.9, B:K.40, B:K.40, B:D.116, B:N.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, B. et al., Structures of human O-GlcNAcase and its complexes reveal a new substrate recognition mode. Nat. Struct. Mol. Biol. (2017)

Release Date

2017-03-15

Peptides

Protein O-GlcNAcase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein O-GlcNAcase

Related Entries With Identical Sequence