SMTL ID : 5unb.1

Crystal structure of putative Putative deoxyribonuclease-2 from Burkholderia thailandensis in complex with copper

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

3 x CU: COPPER (II) ION(Non-covalent)

CU.1: 2 residues within 4Å: Chain A: H.108, E.311 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.108, H2O.3, H2O.10, H2O.12, H2O.12 CU.2: 1 residues within 4Å: Chain A: H.184 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.184 CU.4: 1 residues within 4Å: Chain B: H.184 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.184, H2O.13, H2O.20, H2O.27

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 9 residues within 4Å: Chain A: T.109, W.124, L.126, M.166, Q.170, V.218, D.303, G.316, T.317 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.109, A:Q.170 EDO.5: 7 residues within 4Å: Chain B: Y.90, W.124, Q.170, V.218, D.303, G.316, T.317 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.90, B:Q.170, B:D.303

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Varela-Ramirez, A. et al., Structure of acid deoxyribonuclease. Nucleic Acids Res. (2017)

Release Date

2017-02-15

Peptides

Putative deoxyribonuclease-2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative deoxyribonuclease-2

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