SMTL ID : 5up2.1

Triheteromeric NMDA receptor GluN1/GluN2A/GluN2B in complex with glycine, glutamate, Ro 25-6981, MK-801 and a GluN2B-specific Fab, at pH 6.5

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-2-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.276 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain C: N.203, T.205 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain C: N.276, S.278, A.279 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 1 residues within 4Å: Chain D: N.336 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 1 residues within 4Å: Chain D: N.681 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.681

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, W. et al., Cryo-EM structures of the triheteromeric NMDA receptor and its allosteric modulation. Science (2017)

Release Date

2017-03-22

Peptides

N-methyl-D-aspartate receptor subunit NR1-8a: AC
N-methyl-D-aspartate receptor subunit NR2A: B
Ionotropic glutamate receptor subunit NR2B: D
GluN2B-specific Fab, termed 11D1: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

E
F

F
G

Membrane

We predict this structure to be a membrane protein.
Show / Hide

N-methyl-D-aspartate receptor subunit NR1-8a

N-methyl-D-aspartate receptor subunit NR2A

Ionotropic glutamate receptor subunit NR2B

GluN2B-specific Fab, termed 11D1

Related Entries With Identical Sequence