SMTL ID : 5up7.1

Crystal Structure of the Ni-bound Human Heavy-Chain Ferritin 122H-delta C-star variant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-24-mer

Ligands

120 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 3 residues within 4Å: Chain A: E.27, E.62, H.65 Ligand excluded by PLIP NI.2: 3 residues within 4Å: Chain A: Q.58, E.62, E.107 Ligand excluded by PLIP NI.3: 5 residues within 4Å: Chain A: H.122 Chain E: H.122 Chain I: H.122 Ligands: NI.39, NI.75 Ligand excluded by PLIP NI.4: 11 residues within 4Å: Chain A: H.173 Chain C: H.173 Chain U: H.173 Chain W: H.173 Ligands: CL.8, NI.22, CL.26, NI.184, CL.188, NI.202, CL.206 Ligand excluded by PLIP NI.5: 1 residues within 4Å: Chain A: H.105 Ligand excluded by PLIP NI.10: 3 residues within 4Å: Chain B: E.27, E.62, H.65 Ligand excluded by PLIP NI.11: 3 residues within 4Å: Chain B: Q.58, E.62, E.107 Ligand excluded by PLIP NI.12: 5 residues within 4Å: Chain B: H.122 Chain G: H.122 Chain L: H.122 Ligands: NI.57, NI.102 Ligand excluded by PLIP NI.13: 11 residues within 4Å: Chain B: H.173 Chain D: H.173 Chain V: H.173 Chain X: H.173 Ligands: CL.17, NI.31, CL.35, NI.193, CL.197, NI.211, CL.215 Ligand excluded by PLIP NI.14: 1 residues within 4Å: Chain B: H.105 Ligand excluded by PLIP NI.19: 3 residues within 4Å: Chain C: E.27, E.62, H.65 Ligand excluded by PLIP NI.20: 3 residues within 4Å: Chain C: Q.58, E.62, E.107 Ligand excluded by PLIP NI.21: 5 residues within 4Å: Chain C: H.122 Chain H: H.122 Chain J: H.122 Ligands: NI.66, NI.84 Ligand excluded by PLIP NI.22: 11 residues within 4Å: Chain A: H.173 Chain C: H.173 Chain U: H.173 Chain W: H.173 Ligands: NI.4, CL.8, CL.26, NI.184, CL.188, NI.202, CL.206 Ligand excluded by PLIP NI.23: 1 residues within 4Å: Chain C: H.105 Ligand excluded by PLIP NI.28: 3 residues within 4Å: Chain D: E.27, E.62, H.65 Ligand excluded by PLIP NI.29: 3 residues within 4Å: Chain D: Q.58, E.62, E.107 Ligand excluded by PLIP NI.30: 5 residues within 4Å: Chain D: H.122 Chain F: H.122 Chain K: H.122 Ligands: NI.48, NI.93 Ligand excluded by PLIP NI.31: 11 residues within 4Å: Chain B: H.173 Chain D: H.173 Chain V: H.173 Chain X: H.173 Ligands: NI.13, CL.17, CL.35, NI.193, CL.197, NI.211, CL.215 Ligand excluded by PLIP NI.32: 1 residues within 4Å: Chain D: H.105 Ligand excluded by PLIP NI.37: 3 residues within 4Å: Chain E: E.27, E.62, H.65 Ligand excluded by PLIP NI.38: 3 residues within 4Å: Chain E: Q.58, E.62, E.107 Ligand excluded by PLIP NI.39: 5 residues within 4Å: Chain A: H.122 Chain E: H.122 Chain I: H.122 Ligands: NI.3, NI.75 Ligand excluded by PLIP NI.40: 11 residues within 4Å: Chain E: H.173 Chain G: H.173 Chain R: H.173 Chain T: H.173 Ligands: CL.44, NI.58, CL.62, NI.157, CL.161, NI.175, CL.179 Ligand excluded by PLIP NI.41: 1 residues within 4Å: Chain E: H.105 Ligand excluded by PLIP NI.46: 3 residues within 4Å: Chain F: E.27, E.62, H.65 Ligand excluded by PLIP NI.47: 3 residues within 4Å: Chain F: Q.58, E.62, E.107 Ligand excluded by PLIP NI.48: 5 residues within 4Å: Chain D: H.122 Chain F: H.122 Chain K: H.122 Ligands: NI.30, NI.93 Ligand excluded by PLIP NI.49: 11 residues within 4Å: Chain F: H.173 Chain H: H.173 Chain Q: H.173 Chain S: H.173 Ligands: CL.53, NI.67, CL.71, NI.148, CL.152, NI.166, CL.170 Ligand excluded by PLIP NI.50: 1 residues within 4Å: Chain F: H.105 Ligand excluded by PLIP NI.55: 3 residues within 4Å: Chain G: E.27, E.62, H.65 Ligand excluded by PLIP NI.56: 3 residues within 4Å: Chain G: Q.58, E.62, E.107 Ligand excluded by PLIP NI.57: 5 residues within 4Å: Chain B: H.122 Chain G: H.122 Chain L: H.122 Ligands: NI.12, NI.102 Ligand excluded by PLIP NI.58: 11 residues within 4Å: Chain E: H.173 Chain G: H.173 Chain R: H.173 Chain T: H.173 Ligands: NI.40, CL.44, CL.62, NI.157, CL.161, NI.175, CL.179 Ligand excluded by PLIP NI.59: 1 residues within 4Å: Chain G: H.105 Ligand excluded by PLIP NI.64: 3 residues within 4Å: Chain H: E.27, E.62, H.65 Ligand excluded by PLIP NI.65: 3 residues within 4Å: Chain H: Q.58, E.62, E.107 Ligand excluded by PLIP NI.66: 5 residues within 4Å: Chain C: H.122 Chain H: H.122 Chain J: H.122 Ligands: NI.21, NI.84 Ligand excluded by PLIP NI.67: 11 residues within 4Å: Chain F: H.173 Chain H: H.173 Chain Q: H.173 Chain S: H.173 Ligands: NI.49, CL.53, CL.71, NI.148, CL.152, NI.166, CL.170 Ligand excluded by PLIP NI.68: 1 residues within 4Å: Chain H: H.105 Ligand excluded by PLIP NI.73: 3 residues within 4Å: Chain I: E.27, E.62, H.65 Ligand excluded by PLIP NI.74: 3 residues within 4Å: Chain I: Q.58, E.62, E.107 Ligand excluded by PLIP NI.75: 5 residues within 4Å: Chain A: H.122 Chain E: H.122 Chain I: H.122 Ligands: NI.3, NI.39 Ligand excluded by PLIP NI.76: 11 residues within 4Å: Chain I: H.173 Chain K: H.173 Chain M: H.173 Chain O: H.173 Ligands: CL.80, NI.94, CL.98, NI.112, CL.116, NI.130, CL.134 Ligand excluded by PLIP NI.77: 1 residues within 4Å: Chain I: H.105 Ligand excluded by PLIP NI.82: 3 residues within 4Å: Chain J: E.27, E.62, H.65 Ligand excluded by PLIP NI.83: 3 residues within 4Å: Chain J: Q.58, E.62, E.107 Ligand excluded by PLIP NI.84: 5 residues within 4Å: Chain C: H.122 Chain H: H.122 Chain J: H.122 Ligands: NI.21, NI.66 Ligand excluded by PLIP NI.85: 11 residues within 4Å: Chain J: H.173 Chain L: H.173 Chain N: H.173 Chain P: H.173 Ligands: CL.89, NI.103, CL.107, NI.121, CL.125, NI.139, CL.143 Ligand excluded by PLIP NI.86: 1 residues within 4Å: Chain J: H.105 Ligand excluded by PLIP NI.91: 3 residues within 4Å: Chain K: E.27, E.62, H.65 Ligand excluded by PLIP NI.92: 3 residues within 4Å: Chain K: Q.58, E.62, E.107 Ligand excluded by PLIP NI.93: 5 residues within 4Å: Chain D: H.122 Chain F: H.122 Chain K: H.122 Ligands: NI.30, NI.48 Ligand excluded by PLIP NI.94: 11 residues within 4Å: Chain I: H.173 Chain K: H.173 Chain M: H.173 Chain O: H.173 Ligands: NI.76, CL.80, CL.98, NI.112, CL.116, NI.130, CL.134 Ligand excluded by PLIP NI.95: 1 residues within 4Å: Chain K: H.105 Ligand excluded by PLIP NI.100: 3 residues within 4Å: Chain L: E.27, E.62, H.65 Ligand excluded by PLIP NI.101: 3 residues within 4Å: Chain L: Q.58, E.62, E.107 Ligand excluded by PLIP NI.102: 5 residues within 4Å: Chain B: H.122 Chain G: H.122 Chain L: H.122 Ligands: NI.12, NI.57 Ligand excluded by PLIP NI.103: 11 residues within 4Å: Chain J: H.173 Chain L: H.173 Chain N: H.173 Chain P: H.173 Ligands: NI.85, CL.89, CL.107, NI.121, CL.125, NI.139, CL.143 Ligand excluded by PLIP NI.104: 1 residues within 4Å: Chain L: H.105 Ligand excluded by PLIP NI.109: 3 residues within 4Å: Chain M: E.27, E.62, H.65 Ligand excluded by PLIP NI.110: 3 residues within 4Å: Chain M: Q.58, E.62, E.107 Ligand excluded by PLIP NI.111: 5 residues within 4Å: Chain M: H.122 Chain Q: H.122 Chain U: H.122 Ligands: NI.147, NI.183 Ligand excluded by PLIP NI.112: 11 residues within 4Å: Chain I: H.173 Chain K: H.173 Chain M: H.173 Chain O: H.173 Ligands: NI.76, CL.80, NI.94, CL.98, CL.116, NI.130, CL.134 Ligand excluded by PLIP NI.113: 1 residues within 4Å: Chain M: H.105 Ligand excluded by PLIP NI.118: 3 residues within 4Å: Chain N: E.27, E.62, H.65 Ligand excluded by PLIP NI.119: 3 residues within 4Å: Chain N: Q.58, E.62, E.107 Ligand excluded by PLIP NI.120: 5 residues within 4Å: Chain N: H.122 Chain S: H.122 Chain X: H.122 Ligands: NI.165, NI.210 Ligand excluded by PLIP NI.121: 11 residues within 4Å: Chain J: H.173 Chain L: H.173 Chain N: H.173 Chain P: H.173 Ligands: NI.85, CL.89, NI.103, CL.107, CL.125, NI.139, CL.143 Ligand excluded by PLIP NI.122: 1 residues within 4Å: Chain N: H.105 Ligand excluded by PLIP NI.127: 3 residues within 4Å: Chain O: E.27, E.62, H.65 Ligand excluded by PLIP NI.128: 3 residues within 4Å: Chain O: Q.58, E.62, E.107 Ligand excluded by PLIP NI.129: 5 residues within 4Å: Chain O: H.122 Chain T: H.122 Chain V: H.122 Ligands: NI.174, NI.192 Ligand excluded by PLIP NI.130: 11 residues within 4Å: Chain I: H.173 Chain K: H.173 Chain M: H.173 Chain O: H.173 Ligands: NI.76, CL.80, NI.94, CL.98, NI.112, CL.116, CL.134 Ligand excluded by PLIP NI.131: 1 residues within 4Å: Chain O: H.105 Ligand excluded by PLIP NI.136: 3 residues within 4Å: Chain P: E.27, E.62, H.65 Ligand excluded by PLIP NI.137: 3 residues within 4Å: Chain P: Q.58, E.62, E.107 Ligand excluded by PLIP NI.138: 5 residues within 4Å: Chain P: H.122 Chain R: H.122 Chain W: H.122 Ligands: NI.156, NI.201 Ligand excluded by PLIP NI.139: 11 residues within 4Å: Chain J: H.173 Chain L: H.173 Chain N: H.173 Chain P: H.173 Ligands: NI.85, CL.89, NI.103, CL.107, NI.121, CL.125, CL.143 Ligand excluded by PLIP NI.140: 1 residues within 4Å: Chain P: H.105 Ligand excluded by PLIP NI.145: 3 residues within 4Å: Chain Q: E.27, E.62, H.65 Ligand excluded by PLIP NI.146: 3 residues within 4Å: Chain Q: Q.58, E.62, E.107 Ligand excluded by PLIP NI.147: 5 residues within 4Å: Chain M: H.122 Chain Q: H.122 Chain U: H.122 Ligands: NI.111, NI.183 Ligand excluded by PLIP NI.148: 11 residues within 4Å: Chain F: H.173 Chain H: H.173 Chain Q: H.173 Chain S: H.173 Ligands: NI.49, CL.53, NI.67, CL.71, CL.152, NI.166, CL.170 Ligand excluded by PLIP NI.149: 1 residues within 4Å: Chain Q: H.105 Ligand excluded by PLIP NI.154: 3 residues within 4Å: Chain R: E.27, E.62, H.65 Ligand excluded by PLIP NI.155: 3 residues within 4Å: Chain R: Q.58, E.62, E.107 Ligand excluded by PLIP NI.156: 5 residues within 4Å: Chain P: H.122 Chain R: H.122 Chain W: H.122 Ligands: NI.138, NI.201 Ligand excluded by PLIP NI.157: 11 residues within 4Å: Chain E: H.173 Chain G: H.173 Chain R: H.173 Chain T: H.173 Ligands: NI.40, CL.44, NI.58, CL.62, CL.161, NI.175, CL.179 Ligand excluded by PLIP NI.158: 1 residues within 4Å: Chain R: H.105 Ligand excluded by PLIP NI.163: 3 residues within 4Å: Chain S: E.27, E.62, H.65 Ligand excluded by PLIP NI.164: 3 residues within 4Å: Chain S: Q.58, E.62, E.107 Ligand excluded by PLIP NI.165: 5 residues within 4Å: Chain N: H.122 Chain S: H.122 Chain X: H.122 Ligands: NI.120, NI.210 Ligand excluded by PLIP NI.166: 11 residues within 4Å: Chain F: H.173 Chain H: H.173 Chain Q: H.173 Chain S: H.173 Ligands: NI.49, CL.53, NI.67, CL.71, NI.148, CL.152, CL.170 Ligand excluded by PLIP NI.167: 1 residues within 4Å: Chain S: H.105 Ligand excluded by PLIP NI.172: 3 residues within 4Å: Chain T: E.27, E.62, H.65 Ligand excluded by PLIP NI.173: 3 residues within 4Å: Chain T: Q.58, E.62, E.107 Ligand excluded by PLIP NI.174: 5 residues within 4Å: Chain O: H.122 Chain T: H.122 Chain V: H.122 Ligands: NI.129, NI.192 Ligand excluded by PLIP NI.175: 11 residues within 4Å: Chain E: H.173 Chain G: H.173 Chain R: H.173 Chain T: H.173 Ligands: NI.40, CL.44, NI.58, CL.62, NI.157, CL.161, CL.179 Ligand excluded by PLIP NI.176: 1 residues within 4Å: Chain T: H.105 Ligand excluded by PLIP NI.181: 3 residues within 4Å: Chain U: E.27, E.62, H.65 Ligand excluded by PLIP NI.182: 3 residues within 4Å: Chain U: Q.58, E.62, E.107 Ligand excluded by PLIP NI.183: 5 residues within 4Å: Chain M: H.122 Chain Q: H.122 Chain U: H.122 Ligands: NI.111, NI.147 Ligand excluded by PLIP NI.184: 11 residues within 4Å: Chain A: H.173 Chain C: H.173 Chain U: H.173 Chain W: H.173 Ligands: NI.4, CL.8, NI.22, CL.26, CL.188, NI.202, CL.206 Ligand excluded by PLIP NI.185: 1 residues within 4Å: Chain U: H.105 Ligand excluded by PLIP NI.190: 3 residues within 4Å: Chain V: E.27, E.62, H.65 Ligand excluded by PLIP NI.191: 3 residues within 4Å: Chain V: Q.58, E.62, E.107 Ligand excluded by PLIP NI.192: 5 residues within 4Å: Chain O: H.122 Chain T: H.122 Chain V: H.122 Ligands: NI.129, NI.174 Ligand excluded by PLIP NI.193: 11 residues within 4Å: Chain B: H.173 Chain D: H.173 Chain V: H.173 Chain X: H.173 Ligands: NI.13, CL.17, NI.31, CL.35, CL.197, NI.211, CL.215 Ligand excluded by PLIP NI.194: 1 residues within 4Å: Chain V: H.105 Ligand excluded by PLIP NI.199: 3 residues within 4Å: Chain W: E.27, E.62, H.65 Ligand excluded by PLIP NI.200: 3 residues within 4Å: Chain W: Q.58, E.62, E.107 Ligand excluded by PLIP NI.201: 5 residues within 4Å: Chain P: H.122 Chain R: H.122 Chain W: H.122 Ligands: NI.138, NI.156 Ligand excluded by PLIP NI.202: 11 residues within 4Å: Chain A: H.173 Chain C: H.173 Chain U: H.173 Chain W: H.173 Ligands: NI.4, CL.8, NI.22, CL.26, NI.184, CL.188, CL.206 Ligand excluded by PLIP NI.203: 1 residues within 4Å: Chain W: H.105 Ligand excluded by PLIP NI.208: 3 residues within 4Å: Chain X: E.27, E.62, H.65 Ligand excluded by PLIP NI.209: 3 residues within 4Å: Chain X: Q.58, E.62, E.107 Ligand excluded by PLIP NI.210: 5 residues within 4Å: Chain N: H.122 Chain S: H.122 Chain X: H.122 Ligands: NI.120, NI.165 Ligand excluded by PLIP NI.211: 11 residues within 4Å: Chain B: H.173 Chain D: H.173 Chain V: H.173 Chain X: H.173 Ligands: NI.13, CL.17, NI.31, CL.35, NI.193, CL.197, CL.215 Ligand excluded by PLIP NI.212: 1 residues within 4Å: Chain X: H.105 Ligand excluded by PLIP

48 x CA: CALCIUM ION(Non-covalent)

CA.6: 2 residues within 4Å: Chain A: D.84 Chain R: Q.86 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.84, A:D.84, H2O.10 CA.7: 8 residues within 4Å: Chain A: D.131, E.134 Chain E: D.131, E.134 Chain I: D.131, E.134 Ligands: CA.43, CA.79 6 PLIP interactions: 2 interactions with chain A, 2 interactions with chain I, 2 interactions with chain E Metal complexes: A:D.131, A:E.134, I:D.131, I:E.134, E:D.131, E:E.134 CA.15: 2 residues within 4Å: Chain B: D.84 Chain T: Q.86 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.84, B:D.84, H2O.23 CA.16: 8 residues within 4Å: Chain B: D.131, E.134 Chain G: D.131, E.134 Chain L: D.131, E.134 Ligands: CA.61, CA.106 6 PLIP interactions: 2 interactions with chain G, 2 interactions with chain B, 2 interactions with chain L Metal complexes: G:D.131, G:E.134, B:D.131, B:E.134, L:D.131, L:E.134 CA.24: 2 residues within 4Å: Chain C: D.84 Chain Q: Q.86 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.84, C:D.84, H2O.35 CA.25: 8 residues within 4Å: Chain C: D.131, E.134 Chain H: D.131, E.134 Chain J: D.131, E.134 Ligands: CA.70, CA.88 6 PLIP interactions: 2 interactions with chain J, 2 interactions with chain C, 2 interactions with chain H Metal complexes: J:D.131, J:E.134, C:D.131, C:E.134, H:D.131, H:E.134 CA.33: 2 residues within 4Å: Chain D: D.84 Chain S: Q.86 3 PLIP interactions: 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.84, D:D.84, H2O.48 CA.34: 8 residues within 4Å: Chain D: D.131, E.134 Chain F: D.131, E.134 Chain K: D.131, E.134 Ligands: CA.52, CA.97 6 PLIP interactions: 2 interactions with chain K, 2 interactions with chain F, 2 interactions with chain D Metal complexes: K:D.131, K:E.134, F:D.131, F:E.134, D:D.131, D:E.134 CA.42: 2 residues within 4Å: Chain E: D.84 Chain O: Q.86 3 PLIP interactions: 2 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:D.84, E:D.84, H2O.60 CA.43: 8 residues within 4Å: Chain A: D.131, E.134 Chain E: D.131, E.134 Chain I: D.131, E.134 Ligands: CA.7, CA.79 6 PLIP interactions: 2 interactions with chain A, 2 interactions with chain I, 2 interactions with chain E Metal complexes: A:D.131, A:E.134, I:D.131, I:E.134, E:D.131, E:E.134 CA.51: 2 residues within 4Å: Chain F: D.84 Chain M: Q.86 3 PLIP interactions: 2 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:D.84, F:D.84, H2O.73 CA.52: 8 residues within 4Å: Chain D: D.131, E.134 Chain F: D.131, E.134 Chain K: D.131, E.134 Ligands: CA.34, CA.97 6 PLIP interactions: 2 interactions with chain K, 2 interactions with chain F, 2 interactions with chain D Metal complexes: K:D.131, K:E.134, F:D.131, F:E.134, D:D.131, D:E.134 CA.60: 2 residues within 4Å: Chain G: D.84 Chain P: Q.86 3 PLIP interactions: 2 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:D.84, G:D.84, H2O.85 CA.61: 8 residues within 4Å: Chain B: D.131, E.134 Chain G: D.131, E.134 Chain L: D.131, E.134 Ligands: CA.16, CA.106 6 PLIP interactions: 2 interactions with chain G, 2 interactions with chain B, 2 interactions with chain L Metal complexes: G:D.131, G:E.134, B:D.131, B:E.134, L:D.131, L:E.134 CA.69: 2 residues within 4Å: Chain H: D.84 Chain N: Q.86 3 PLIP interactions: 2 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:D.84, H:D.84, H2O.98 CA.70: 8 residues within 4Å: Chain C: D.131, E.134 Chain H: D.131, E.134 Chain J: D.131, E.134 Ligands: CA.25, CA.88 6 PLIP interactions: 2 interactions with chain J, 2 interactions with chain C, 2 interactions with chain H Metal complexes: J:D.131, J:E.134, C:D.131, C:E.134, H:D.131, H:E.134 CA.78: 2 residues within 4Å: Chain I: D.84 Chain U: Q.86 3 PLIP interactions: 2 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:D.84, I:D.84, H2O.111 CA.79: 8 residues within 4Å: Chain A: D.131, E.134 Chain E: D.131, E.134 Chain I: D.131, E.134 Ligands: CA.7, CA.43 6 PLIP interactions: 2 interactions with chain I, 2 interactions with chain A, 2 interactions with chain E Metal complexes: I:D.131, I:E.134, A:D.131, A:E.134, E:D.131, E:E.134 CA.87: 2 residues within 4Å: Chain J: D.84 Chain W: Q.86 3 PLIP interactions: 2 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:D.84, J:D.84, H2O.123 CA.88: 8 residues within 4Å: Chain C: D.131, E.134 Chain H: D.131, E.134 Chain J: D.131, E.134 Ligands: CA.25, CA.70 6 PLIP interactions: 2 interactions with chain J, 2 interactions with chain C, 2 interactions with chain H Metal complexes: J:D.131, J:E.134, C:D.131, C:E.134, H:D.131, H:E.134 CA.96: 2 residues within 4Å: Chain K: D.84 Chain V: Q.86 3 PLIP interactions: 2 interactions with chain K, 1 Ligand-Water interactions Metal complexes: K:D.84, K:D.84, H2O.136 CA.97: 8 residues within 4Å: Chain D: D.131, E.134 Chain F: D.131, E.134 Chain K: D.131, E.134 Ligands: CA.34, CA.52 6 PLIP interactions: 2 interactions with chain F, 2 interactions with chain D, 2 interactions with chain K Metal complexes: F:D.131, F:E.134, D:D.131, D:E.134, K:D.131, K:E.134 CA.105: 2 residues within 4Å: Chain L: D.84 Chain X: Q.86 3 PLIP interactions: 2 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:D.84, L:D.84, H2O.148 CA.106: 8 residues within 4Å: Chain B: D.131, E.134 Chain G: D.131, E.134 Chain L: D.131, E.134 Ligands: CA.16, CA.61 6 PLIP interactions: 2 interactions with chain G, 2 interactions with chain B, 2 interactions with chain L Metal complexes: G:D.131, G:E.134, B:D.131, B:E.134, L:D.131, L:E.134 CA.114: 2 residues within 4Å: Chain F: Q.86 Chain M: D.84 3 PLIP interactions: 2 interactions with chain M, 1 Ligand-Water interactions Metal complexes: M:D.84, M:D.84, H2O.161 CA.115: 8 residues within 4Å: Chain M: D.131, E.134 Chain Q: D.131, E.134 Chain U: D.131, E.134 Ligands: CA.151, CA.187 6 PLIP interactions: 2 interactions with chain Q, 2 interactions with chain M, 2 interactions with chain U Metal complexes: Q:D.131, Q:E.134, M:D.131, M:E.134, U:D.131, U:E.134 CA.123: 2 residues within 4Å: Chain H: Q.86 Chain N: D.84 3 PLIP interactions: 2 interactions with chain N, 1 Ligand-Water interactions Metal complexes: N:D.84, N:D.84, H2O.173 CA.124: 8 residues within 4Å: Chain N: D.131, E.134 Chain S: D.131, E.134 Chain X: D.131, E.134 Ligands: CA.169, CA.214 6 PLIP interactions: 2 interactions with chain N, 2 interactions with chain X, 2 interactions with chain S Metal complexes: N:D.131, N:E.134, X:D.131, X:E.134, S:D.131, S:E.134 CA.132: 2 residues within 4Å: Chain E: Q.86 Chain O: D.84 3 PLIP interactions: 2 interactions with chain O, 1 Ligand-Water interactions Metal complexes: O:D.84, O:D.84, H2O.186 CA.133: 8 residues within 4Å: Chain O: D.131, E.134 Chain T: D.131, E.134 Chain V: D.131, E.134 Ligands: CA.178, CA.196 6 PLIP interactions: 2 interactions with chain O, 2 interactions with chain V, 2 interactions with chain T Metal complexes: O:D.131, O:E.134, V:D.131, V:E.134, T:D.131, T:E.134 CA.141: 2 residues within 4Å: Chain G: Q.86 Chain P: D.84 3 PLIP interactions: 2 interactions with chain P, 1 Ligand-Water interactions Metal complexes: P:D.84, P:D.84, H2O.199 CA.142: 8 residues within 4Å: Chain P: D.131, E.134 Chain R: D.131, E.134 Chain W: D.131, E.134 Ligands: CA.160, CA.205 6 PLIP interactions: 2 interactions with chain R, 2 interactions with chain W, 2 interactions with chain P Metal complexes: R:D.131, R:E.134, W:D.131, W:E.134, P:D.131, P:E.134 CA.150: 2 residues within 4Å: Chain C: Q.86 Chain Q: D.84 3 PLIP interactions: 2 interactions with chain Q, 1 Ligand-Water interactions Metal complexes: Q:D.84, Q:D.84, H2O.211 CA.151: 8 residues within 4Å: Chain M: D.131, E.134 Chain Q: D.131, E.134 Chain U: D.131, E.134 Ligands: CA.115, CA.187 6 PLIP interactions: 2 interactions with chain M, 2 interactions with chain Q, 2 interactions with chain U Metal complexes: M:D.131, M:E.134, Q:D.131, Q:E.134, U:D.131, U:E.134 CA.159: 2 residues within 4Å: Chain A: Q.86 Chain R: D.84 3 PLIP interactions: 2 interactions with chain R, 1 Ligand-Water interactions Metal complexes: R:D.84, R:D.84, H2O.224 CA.160: 8 residues within 4Å: Chain P: D.131, E.134 Chain R: D.131, E.134 Chain W: D.131, E.134 Ligands: CA.142, CA.205 6 PLIP interactions: 2 interactions with chain R, 2 interactions with chain W, 2 interactions with chain P Metal complexes: R:D.131, R:E.134, W:D.131, W:E.134, P:D.131, P:E.134 CA.168: 2 residues within 4Å: Chain D: Q.86 Chain S: D.84 3 PLIP interactions: 2 interactions with chain S, 1 Ligand-Water interactions Metal complexes: S:D.84, S:D.84, H2O.236 CA.169: 8 residues within 4Å: Chain N: D.131, E.134 Chain S: D.131, E.134 Chain X: D.131, E.134 Ligands: CA.124, CA.214 6 PLIP interactions: 2 interactions with chain X, 2 interactions with chain N, 2 interactions with chain S Metal complexes: X:D.131, X:E.134, N:D.131, N:E.134, S:D.131, S:E.134 CA.177: 2 residues within 4Å: Chain B: Q.86 Chain T: D.84 3 PLIP interactions: 2 interactions with chain T, 1 Ligand-Water interactions Metal complexes: T:D.84, T:D.84, H2O.249 CA.178: 8 residues within 4Å: Chain O: D.131, E.134 Chain T: D.131, E.134 Chain V: D.131, E.134 Ligands: CA.133, CA.196 6 PLIP interactions: 2 interactions with chain O, 2 interactions with chain T, 2 interactions with chain V Metal complexes: O:D.131, O:E.134, T:D.131, T:E.134, V:D.131, V:E.134 CA.186: 2 residues within 4Å: Chain I: Q.86 Chain U: D.84 3 PLIP interactions: 2 interactions with chain U, 1 Ligand-Water interactions Metal complexes: U:D.84, U:D.84, H2O.261 CA.187: 8 residues within 4Å: Chain M: D.131, E.134 Chain Q: D.131, E.134 Chain U: D.131, E.134 Ligands: CA.115, CA.151 6 PLIP interactions: 2 interactions with chain M, 2 interactions with chain Q, 2 interactions with chain U Metal complexes: M:D.131, M:E.134, Q:D.131, Q:E.134, U:D.131, U:E.134 CA.195: 2 residues within 4Å: Chain K: Q.86 Chain V: D.84 3 PLIP interactions: 2 interactions with chain V, 1 Ligand-Water interactions Metal complexes: V:D.84, V:D.84, H2O.274 CA.196: 8 residues within 4Å: Chain O: D.131, E.134 Chain T: D.131, E.134 Chain V: D.131, E.134 Ligands: CA.133, CA.178 6 PLIP interactions: 2 interactions with chain O, 2 interactions with chain T, 2 interactions with chain V Metal complexes: O:D.131, O:E.134, T:D.131, T:E.134, V:D.131, V:E.134 CA.204: 2 residues within 4Å: Chain J: Q.86 Chain W: D.84 3 PLIP interactions: 2 interactions with chain W, 1 Ligand-Water interactions Metal complexes: W:D.84, W:D.84, H2O.287 CA.205: 8 residues within 4Å: Chain P: D.131, E.134 Chain R: D.131, E.134 Chain W: D.131, E.134 Ligands: CA.142, CA.160 6 PLIP interactions: 2 interactions with chain P, 2 interactions with chain W, 2 interactions with chain R Metal complexes: P:D.131, P:E.134, W:D.131, W:E.134, R:D.131, R:E.134 CA.213: 2 residues within 4Å: Chain L: Q.86 Chain X: D.84 3 PLIP interactions: 2 interactions with chain X, 1 Ligand-Water interactions Metal complexes: X:D.84, X:D.84, H2O.299 CA.214: 8 residues within 4Å: Chain N: D.131, E.134 Chain S: D.131, E.134 Chain X: D.131, E.134 Ligands: CA.124, CA.169 6 PLIP interactions: 2 interactions with chain N, 2 interactions with chain S, 2 interactions with chain X Metal complexes: N:D.131, N:E.134, S:D.131, S:E.134, X:D.131, X:E.134

24 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 15 residues within 4Å: Chain A: L.169, H.173 Chain C: L.169, H.173 Chain U: L.169, H.173 Chain W: L.169, H.173 Ligands: NI.4, NI.22, CL.26, NI.184, CL.188, NI.202, CL.206 Ligand excluded by PLIP CL.17: 15 residues within 4Å: Chain B: L.169, H.173 Chain D: L.169, H.173 Chain V: L.169, H.173 Chain X: L.169, H.173 Ligands: NI.13, NI.31, CL.35, NI.193, CL.197, NI.211, CL.215 Ligand excluded by PLIP CL.26: 15 residues within 4Å: Chain A: L.169, H.173 Chain C: L.169, H.173 Chain U: L.169, H.173 Chain W: L.169, H.173 Ligands: NI.4, CL.8, NI.22, NI.184, CL.188, NI.202, CL.206 Ligand excluded by PLIP CL.35: 15 residues within 4Å: Chain B: L.169, H.173 Chain D: L.169, H.173 Chain V: L.169, H.173 Chain X: L.169, H.173 Ligands: NI.13, CL.17, NI.31, NI.193, CL.197, NI.211, CL.215 Ligand excluded by PLIP CL.44: 15 residues within 4Å: Chain E: L.169, H.173 Chain G: L.169, H.173 Chain R: L.169, H.173 Chain T: L.169, H.173 Ligands: NI.40, NI.58, CL.62, NI.157, CL.161, NI.175, CL.179 Ligand excluded by PLIP CL.53: 15 residues within 4Å: Chain F: L.169, H.173 Chain H: L.169, H.173 Chain Q: L.169, H.173 Chain S: L.169, H.173 Ligands: NI.49, NI.67, CL.71, NI.148, CL.152, NI.166, CL.170 Ligand excluded by PLIP CL.62: 15 residues within 4Å: Chain E: L.169, H.173 Chain G: L.169, H.173 Chain R: L.169, H.173 Chain T: L.169, H.173 Ligands: NI.40, CL.44, NI.58, NI.157, CL.161, NI.175, CL.179 Ligand excluded by PLIP CL.71: 15 residues within 4Å: Chain F: L.169, H.173 Chain H: L.169, H.173 Chain Q: L.169, H.173 Chain S: L.169, H.173 Ligands: NI.49, CL.53, NI.67, NI.148, CL.152, NI.166, CL.170 Ligand excluded by PLIP CL.80: 15 residues within 4Å: Chain I: L.169, H.173 Chain K: L.169, H.173 Chain M: L.169, H.173 Chain O: L.169, H.173 Ligands: NI.76, NI.94, CL.98, NI.112, CL.116, NI.130, CL.134 Ligand excluded by PLIP CL.89: 15 residues within 4Å: Chain J: L.169, H.173 Chain L: L.169, H.173 Chain N: L.169, H.173 Chain P: L.169, H.173 Ligands: NI.85, NI.103, CL.107, NI.121, CL.125, NI.139, CL.143 Ligand excluded by PLIP CL.98: 15 residues within 4Å: Chain I: L.169, H.173 Chain K: L.169, H.173 Chain M: L.169, H.173 Chain O: L.169, H.173 Ligands: NI.76, CL.80, NI.94, NI.112, CL.116, NI.130, CL.134 Ligand excluded by PLIP CL.107: 15 residues within 4Å: Chain J: L.169, H.173 Chain L: L.169, H.173 Chain N: L.169, H.173 Chain P: L.169, H.173 Ligands: NI.85, CL.89, NI.103, NI.121, CL.125, NI.139, CL.143 Ligand excluded by PLIP CL.116: 15 residues within 4Å: Chain I: L.169, H.173 Chain K: L.169, H.173 Chain M: L.169, H.173 Chain O: L.169, H.173 Ligands: NI.76, CL.80, NI.94, CL.98, NI.112, NI.130, CL.134 Ligand excluded by PLIP CL.125: 15 residues within 4Å: Chain J: L.169, H.173 Chain L: L.169, H.173 Chain N: L.169, H.173 Chain P: L.169, H.173 Ligands: NI.85, CL.89, NI.103, CL.107, NI.121, NI.139, CL.143 Ligand excluded by PLIP CL.134: 15 residues within 4Å: Chain I: L.169, H.173 Chain K: L.169, H.173 Chain M: L.169, H.173 Chain O: L.169, H.173 Ligands: NI.76, CL.80, NI.94, CL.98, NI.112, CL.116, NI.130 Ligand excluded by PLIP CL.143: 15 residues within 4Å: Chain J: L.169, H.173 Chain L: L.169, H.173 Chain N: L.169, H.173 Chain P: L.169, H.173 Ligands: NI.85, CL.89, NI.103, CL.107, NI.121, CL.125, NI.139 Ligand excluded by PLIP CL.152: 15 residues within 4Å: Chain F: L.169, H.173 Chain H: L.169, H.173 Chain Q: L.169, H.173 Chain S: L.169, H.173 Ligands: NI.49, CL.53, NI.67, CL.71, NI.148, NI.166, CL.170 Ligand excluded by PLIP CL.161: 15 residues within 4Å: Chain E: L.169, H.173 Chain G: L.169, H.173 Chain R: L.169, H.173 Chain T: L.169, H.173 Ligands: NI.40, CL.44, NI.58, CL.62, NI.157, NI.175, CL.179 Ligand excluded by PLIP CL.170: 15 residues within 4Å: Chain F: L.169, H.173 Chain H: L.169, H.173 Chain Q: L.169, H.173 Chain S: L.169, H.173 Ligands: NI.49, CL.53, NI.67, CL.71, NI.148, CL.152, NI.166 Ligand excluded by PLIP CL.179: 15 residues within 4Å: Chain E: L.169, H.173 Chain G: L.169, H.173 Chain R: L.169, H.173 Chain T: L.169, H.173 Ligands: NI.40, CL.44, NI.58, CL.62, NI.157, CL.161, NI.175 Ligand excluded by PLIP CL.188: 15 residues within 4Å: Chain A: L.169, H.173 Chain C: L.169, H.173 Chain U: L.169, H.173 Chain W: L.169, H.173 Ligands: NI.4, CL.8, NI.22, CL.26, NI.184, NI.202, CL.206 Ligand excluded by PLIP CL.197: 15 residues within 4Å: Chain B: L.169, H.173 Chain D: L.169, H.173 Chain V: L.169, H.173 Chain X: L.169, H.173 Ligands: NI.13, CL.17, NI.31, CL.35, NI.193, NI.211, CL.215 Ligand excluded by PLIP CL.206: 15 residues within 4Å: Chain A: L.169, H.173 Chain C: L.169, H.173 Chain U: L.169, H.173 Chain W: L.169, H.173 Ligands: NI.4, CL.8, NI.22, CL.26, NI.184, CL.188, NI.202 Ligand excluded by PLIP CL.215: 15 residues within 4Å: Chain B: L.169, H.173 Chain D: L.169, H.173 Chain V: L.169, H.173 Chain X: L.169, H.173 Ligands: NI.13, CL.17, NI.31, CL.35, NI.193, CL.197, NI.211 Ligand excluded by PLIP

24 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.9: 5 residues within 4Å: Chain A: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.18: 5 residues within 4Å: Chain B: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.27: 5 residues within 4Å: Chain C: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.36: 5 residues within 4Å: Chain D: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.45: 5 residues within 4Å: Chain E: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.54: 5 residues within 4Å: Chain F: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.63: 5 residues within 4Å: Chain G: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.72: 5 residues within 4Å: Chain H: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.81: 5 residues within 4Å: Chain I: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.90: 5 residues within 4Å: Chain J: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.99: 5 residues within 4Å: Chain K: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.108: 5 residues within 4Å: Chain L: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.117: 5 residues within 4Å: Chain M: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.126: 5 residues within 4Å: Chain N: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.135: 5 residues within 4Å: Chain O: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.144: 5 residues within 4Å: Chain P: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.153: 5 residues within 4Å: Chain Q: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.162: 5 residues within 4Å: Chain R: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.171: 5 residues within 4Å: Chain S: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.180: 5 residues within 4Å: Chain T: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.189: 5 residues within 4Å: Chain U: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.198: 5 residues within 4Å: Chain V: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.207: 5 residues within 4Å: Chain W: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP EDO.216: 5 residues within 4Å: Chain X: Y.40, R.43, D.45, V.46, D.92 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bailey, J.B. et al., Synthetic Modularity of Protein-Metal-Organic Frameworks. J. Am. Chem. Soc. (2017)

Release Date

2017-06-21

Peptides

Ferritin heavy chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

M
A

N
A

O
A

P
A

Q
A

R
A

S
A

T
A

U
A

V
A

W
A

X
A

Ferritin heavy chain

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