SMTL ID : 5up9.1

Crystal Structure of Zn-bound Human Heavy-Chain ferritin variant 122H-delta C-star with para-xylenedihydroxamate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-24-mer

Ligands

76 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: E.27, E.62, H.65, Q.141 Ligands: ZN.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.27, A:E.62, A:H.65, H2O.1, H2O.2 ZN.2: 3 residues within 4Å: Chain A: E.62, E.107 Ligands: ZN.1 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.62, A:E.107, A:E.107, H2O.2, H2O.4 ZN.3: 4 residues within 4Å: Chain A: H.173 Chain D: H.173 Chain E: H.173 Chain F: H.173 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain F, 1 interactions with chain E, 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: A:H.173, F:H.173, E:H.173, D:H.173, H2O.4 ZN.4: 6 residues within 4Å: Chain A: D.131, E.134 Chain T: D.131, E.134 Chain X: D.131, E.134 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain T, 1 interactions with chain X Metal complexes: A:D.131, A:E.134, T:E.134, X:E.134 ZN.12: 5 residues within 4Å: Chain B: E.27, E.62, H.65, Q.141 Ligands: ZN.13 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.27, B:E.62, B:H.65, H2O.7, H2O.7 ZN.13: 5 residues within 4Å: Chain B: E.62, H.65, E.107, Q.141 Ligands: ZN.12 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.62, B:E.107, B:E.107, H2O.7, H2O.11 ZN.14: 7 residues within 4Å: Chain B: H.173 Chain H: H.173 Chain N: H.173 Chain T: H.173 Ligands: ZN.58, ZN.102, ZN.146 5 PLIP interactions: 1 interactions with chain B, 1 interactions with chain H, 1 interactions with chain T, 1 interactions with chain N, 1 Ligand-Water interactions Metal complexes: B:H.173, H:H.173, T:H.173, N:H.173, H2O.13 ZN.15: 4 residues within 4Å: Chain B: H.122 Chain F: H.122 Chain M: H.122 Ligands: BYX.17 3 PLIP interactions: 1 interactions with chain M, 1 interactions with chain B, 1 interactions with chain F Metal complexes: M:H.122, B:H.122, F:H.122 ZN.18: 3 residues within 4Å: Chain C: H.122 Chain E: H.122 Chain V: H.122 3 PLIP interactions: 1 interactions with chain V, 1 interactions with chain E, 1 interactions with chain C Metal complexes: V:H.122, E:H.122, C:H.122 ZN.19: 5 residues within 4Å: Chain C: E.27, E.62, H.65, Q.141 Ligands: ZN.20 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.27, C:E.62, C:H.65, H2O.14, H2O.14 ZN.20: 5 residues within 4Å: Chain C: E.62, H.65, E.107, Q.141 Ligands: ZN.19 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.62, C:E.107, C:E.107, H2O.14, H2O.16 ZN.21: 7 residues within 4Å: Chain C: H.173 Chain I: H.173 Chain O: H.173 Chain U: H.173 Ligands: ZN.65, ZN.109, ZN.153 4 PLIP interactions: 1 interactions with chain U, 1 interactions with chain O, 1 interactions with chain C, 1 interactions with chain I Metal complexes: U:H.173, O:H.173, C:H.173, I:H.173 ZN.22: 6 residues within 4Å: Chain C: D.131, E.134 Chain E: D.131, E.134 Chain V: D.131, E.134 3 PLIP interactions: 1 interactions with chain V, 1 interactions with chain E, 1 interactions with chain C Metal complexes: V:E.134, E:E.134, C:E.134 ZN.29: 4 residues within 4Å: Chain D: E.62, E.107, Q.141 Ligands: ZN.30 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.62, D:E.107, D:E.107, H2O.22, H2O.26 ZN.30: 5 residues within 4Å: Chain D: E.27, E.62, H.65, Q.141 Ligands: ZN.29 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.27, D:E.62, D:H.65, H2O.21, H2O.22 ZN.36: 5 residues within 4Å: Chain E: E.27, E.62, H.65, Q.141 Ligands: ZN.37 4 PLIP interactions: 3 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:E.27, E:E.62, E:H.65, H2O.29 ZN.37: 5 residues within 4Å: Chain E: E.62, H.65, E.107, Q.141 Ligands: ZN.36 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:E.62, E:E.107, E:E.107 ZN.40: 5 residues within 4Å: Chain F: E.27, E.62, H.65, Q.141 Ligands: ZN.41 4 PLIP interactions: 3 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:E.27, F:E.62, F:H.65, H2O.35 ZN.41: 5 residues within 4Å: Chain F: E.62, H.65, E.107, Q.141 Ligands: ZN.40 4 PLIP interactions: 3 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:E.62, F:E.107, F:E.107, H2O.40 ZN.45: 5 residues within 4Å: Chain G: E.27, E.62, H.65, Q.141 Ligands: ZN.46 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:E.27, G:E.62, G:H.65, H2O.43, H2O.44 ZN.46: 3 residues within 4Å: Chain G: E.62, E.107 Ligands: ZN.45 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:E.62, G:E.107, G:E.107, H2O.44, H2O.46 ZN.47: 4 residues within 4Å: Chain G: H.173 Chain J: H.173 Chain K: H.173 Chain L: H.173 5 PLIP interactions: 1 interactions with chain G, 1 interactions with chain J, 1 interactions with chain L, 1 interactions with chain K, 1 Ligand-Water interactions Metal complexes: G:H.173, J:H.173, L:H.173, K:H.173, H2O.46 ZN.48: 6 residues within 4Å: Chain G: D.131, E.134 Chain N: D.131, E.134 Chain R: D.131, E.134 4 PLIP interactions: 1 interactions with chain N, 1 interactions with chain R, 2 interactions with chain G Metal complexes: N:E.134, R:E.134, G:D.131, G:E.134 ZN.56: 5 residues within 4Å: Chain H: E.27, E.62, H.65, Q.141 Ligands: ZN.57 5 PLIP interactions: 3 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:E.27, H:E.62, H:H.65, H2O.49, H2O.49 ZN.57: 5 residues within 4Å: Chain H: E.62, H.65, E.107, Q.141 Ligands: ZN.56 5 PLIP interactions: 3 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:E.62, H:E.107, H:E.107, H2O.49, H2O.53 ZN.58: 7 residues within 4Å: Chain B: H.173 Chain H: H.173 Chain N: H.173 Chain T: H.173 Ligands: ZN.14, ZN.102, ZN.146 5 PLIP interactions: 1 interactions with chain H, 1 interactions with chain B, 1 interactions with chain T, 1 interactions with chain N, 1 Ligand-Water interactions Metal complexes: H:H.173, B:H.173, T:H.173, N:H.173, H2O.55 ZN.59: 4 residues within 4Å: Chain H: H.122 Chain L: H.122 Chain S: H.122 Ligands: BYX.61 3 PLIP interactions: 1 interactions with chain H, 1 interactions with chain L, 1 interactions with chain S Metal complexes: H:H.122, L:H.122, S:H.122 ZN.62: 3 residues within 4Å: Chain I: H.122 Chain K: H.122 Chain P: H.122 3 PLIP interactions: 1 interactions with chain I, 1 interactions with chain P, 1 interactions with chain K Metal complexes: I:H.122, P:H.122, K:H.122 ZN.63: 5 residues within 4Å: Chain I: E.27, E.62, H.65, Q.141 Ligands: ZN.64 5 PLIP interactions: 3 interactions with chain I, 2 Ligand-Water interactions Metal complexes: I:E.27, I:E.62, I:H.65, H2O.56, H2O.56 ZN.64: 5 residues within 4Å: Chain I: E.62, H.65, E.107, Q.141 Ligands: ZN.63 5 PLIP interactions: 3 interactions with chain I, 2 Ligand-Water interactions Metal complexes: I:E.62, I:E.107, I:E.107, H2O.56, H2O.58 ZN.65: 7 residues within 4Å: Chain C: H.173 Chain I: H.173 Chain O: H.173 Chain U: H.173 Ligands: ZN.21, ZN.109, ZN.153 4 PLIP interactions: 1 interactions with chain I, 1 interactions with chain U, 1 interactions with chain C, 1 interactions with chain O Metal complexes: I:H.173, U:H.173, C:H.173, O:H.173 ZN.66: 6 residues within 4Å: Chain I: D.131, E.134 Chain K: D.131, E.134 Chain P: D.131, E.134 3 PLIP interactions: 1 interactions with chain K, 1 interactions with chain P, 1 interactions with chain I Metal complexes: K:E.134, P:E.134, I:E.134 ZN.73: 4 residues within 4Å: Chain J: E.62, E.107, Q.141 Ligands: ZN.74 5 PLIP interactions: 3 interactions with chain J, 2 Ligand-Water interactions Metal complexes: J:E.62, J:E.107, J:E.107, H2O.64, H2O.68 ZN.74: 5 residues within 4Å: Chain J: E.27, E.62, H.65, Q.141 Ligands: ZN.73 5 PLIP interactions: 3 interactions with chain J, 2 Ligand-Water interactions Metal complexes: J:E.27, J:E.62, J:H.65, H2O.63, H2O.64 ZN.80: 5 residues within 4Å: Chain K: E.27, E.62, H.65, Q.141 Ligands: ZN.81 4 PLIP interactions: 3 interactions with chain K, 1 Ligand-Water interactions Metal complexes: K:E.27, K:E.62, K:H.65, H2O.71 ZN.81: 5 residues within 4Å: Chain K: E.62, H.65, E.107, Q.141 Ligands: ZN.80 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:E.62, K:E.107, K:E.107 ZN.84: 5 residues within 4Å: Chain L: E.27, E.62, H.65, Q.141 Ligands: ZN.85 4 PLIP interactions: 3 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:E.27, L:E.62, L:H.65, H2O.77 ZN.85: 5 residues within 4Å: Chain L: E.62, H.65, E.107, Q.141 Ligands: ZN.84 4 PLIP interactions: 3 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:E.62, L:E.107, L:E.107, H2O.82 ZN.89: 5 residues within 4Å: Chain M: E.27, E.62, H.65, Q.141 Ligands: ZN.90 5 PLIP interactions: 3 interactions with chain M, 2 Ligand-Water interactions Metal complexes: M:E.27, M:E.62, M:H.65, H2O.85, H2O.86 ZN.90: 3 residues within 4Å: Chain M: E.62, E.107 Ligands: ZN.89 5 PLIP interactions: 3 interactions with chain M, 2 Ligand-Water interactions Metal complexes: M:E.62, M:E.107, M:E.107, H2O.86, H2O.88 ZN.91: 4 residues within 4Å: Chain M: H.173 Chain P: H.173 Chain Q: H.173 Chain R: H.173 5 PLIP interactions: 1 interactions with chain R, 1 interactions with chain M, 1 interactions with chain P, 1 interactions with chain Q, 1 Ligand-Water interactions Metal complexes: R:H.173, M:H.173, P:H.173, Q:H.173, H2O.88 ZN.92: 6 residues within 4Å: Chain B: D.131, E.134 Chain F: D.131, E.134 Chain M: D.131, E.134 4 PLIP interactions: 1 interactions with chain F, 2 interactions with chain M, 1 interactions with chain B Metal complexes: F:E.134, M:D.131, M:E.134, B:E.134 ZN.100: 5 residues within 4Å: Chain N: E.27, E.62, H.65, Q.141 Ligands: ZN.101 5 PLIP interactions: 3 interactions with chain N, 2 Ligand-Water interactions Metal complexes: N:E.27, N:E.62, N:H.65, H2O.91, H2O.91 ZN.101: 5 residues within 4Å: Chain N: E.62, H.65, E.107, Q.141 Ligands: ZN.100 5 PLIP interactions: 3 interactions with chain N, 2 Ligand-Water interactions Metal complexes: N:E.62, N:E.107, N:E.107, H2O.91, H2O.95 ZN.102: 7 residues within 4Å: Chain B: H.173 Chain H: H.173 Chain N: H.173 Chain T: H.173 Ligands: ZN.14, ZN.58, ZN.146 5 PLIP interactions: 1 interactions with chain N, 1 interactions with chain H, 1 interactions with chain T, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: N:H.173, H:H.173, T:H.173, B:H.173, H2O.97 ZN.103: 4 residues within 4Å: Chain G: H.122 Chain N: H.122 Chain R: H.122 Ligands: BYX.105 3 PLIP interactions: 1 interactions with chain N, 1 interactions with chain G, 1 interactions with chain R Metal complexes: N:H.122, G:H.122, R:H.122 ZN.106: 3 residues within 4Å: Chain D: H.122 Chain O: H.122 Chain Q: H.122 3 PLIP interactions: 1 interactions with chain Q, 1 interactions with chain O, 1 interactions with chain D Metal complexes: Q:H.122, O:H.122, D:H.122 ZN.107: 5 residues within 4Å: Chain O: E.27, E.62, H.65, Q.141 Ligands: ZN.108 5 PLIP interactions: 3 interactions with chain O, 2 Ligand-Water interactions Metal complexes: O:E.27, O:E.62, O:H.65, H2O.98, H2O.98 ZN.108: 5 residues within 4Å: Chain O: E.62, H.65, E.107, Q.141 Ligands: ZN.107 5 PLIP interactions: 3 interactions with chain O, 2 Ligand-Water interactions Metal complexes: O:E.62, O:E.107, O:E.107, H2O.98, H2O.100 ZN.109: 7 residues within 4Å: Chain C: H.173 Chain I: H.173 Chain O: H.173 Chain U: H.173 Ligands: ZN.21, ZN.65, ZN.153 4 PLIP interactions: 1 interactions with chain I, 1 interactions with chain U, 1 interactions with chain O, 1 interactions with chain C Metal complexes: I:H.173, U:H.173, O:H.173, C:H.173 ZN.110: 6 residues within 4Å: Chain D: D.131, E.134 Chain O: D.131, E.134 Chain Q: D.131, E.134 3 PLIP interactions: 1 interactions with chain O, 1 interactions with chain D, 1 interactions with chain Q Metal complexes: O:E.134, D:E.134, Q:E.134 ZN.117: 4 residues within 4Å: Chain P: E.62, E.107, Q.141 Ligands: ZN.118 5 PLIP interactions: 3 interactions with chain P, 2 Ligand-Water interactions Metal complexes: P:E.62, P:E.107, P:E.107, H2O.106, H2O.110 ZN.118: 5 residues within 4Å: Chain P: E.27, E.62, H.65, Q.141 Ligands: ZN.117 5 PLIP interactions: 3 interactions with chain P, 2 Ligand-Water interactions Metal complexes: P:E.27, P:E.62, P:H.65, H2O.106, H2O.106 ZN.124: 5 residues within 4Å: Chain Q: E.27, E.62, H.65, Q.141 Ligands: ZN.125 4 PLIP interactions: 3 interactions with chain Q, 1 Ligand-Water interactions Metal complexes: Q:E.27, Q:E.62, Q:H.65, H2O.113 ZN.125: 5 residues within 4Å: Chain Q: E.62, H.65, E.107, Q.141 Ligands: ZN.124 3 PLIP interactions: 3 interactions with chain Q Metal complexes: Q:E.62, Q:E.107, Q:E.107 ZN.128: 5 residues within 4Å: Chain R: E.27, E.62, H.65, Q.141 Ligands: ZN.129 4 PLIP interactions: 3 interactions with chain R, 1 Ligand-Water interactions Metal complexes: R:E.27, R:E.62, R:H.65, H2O.119 ZN.129: 5 residues within 4Å: Chain R: E.62, H.65, E.107, Q.141 Ligands: ZN.128 4 PLIP interactions: 3 interactions with chain R, 1 Ligand-Water interactions Metal complexes: R:E.62, R:E.107, R:E.107, H2O.124 ZN.133: 5 residues within 4Å: Chain S: E.27, E.62, H.65, Q.141 Ligands: ZN.134 5 PLIP interactions: 3 interactions with chain S, 2 Ligand-Water interactions Metal complexes: S:E.27, S:E.62, S:H.65, H2O.128, H2O.128 ZN.134: 3 residues within 4Å: Chain S: E.62, E.107 Ligands: ZN.133 5 PLIP interactions: 3 interactions with chain S, 2 Ligand-Water interactions Metal complexes: S:E.62, S:E.107, S:E.107, H2O.128, H2O.130 ZN.135: 4 residues within 4Å: Chain S: H.173 Chain V: H.173 Chain W: H.173 Chain X: H.173 5 PLIP interactions: 1 interactions with chain S, 1 interactions with chain X, 1 interactions with chain V, 1 interactions with chain W, 1 Ligand-Water interactions Metal complexes: S:H.173, X:H.173, V:H.173, W:H.173, H2O.130 ZN.136: 6 residues within 4Å: Chain H: D.131, E.134 Chain L: D.131, E.134 Chain S: D.131, E.134 4 PLIP interactions: 1 interactions with chain H, 2 interactions with chain S, 1 interactions with chain L Metal complexes: H:E.134, S:D.131, S:E.134, L:E.134 ZN.144: 5 residues within 4Å: Chain T: E.27, E.62, H.65, Q.141 Ligands: ZN.145 5 PLIP interactions: 3 interactions with chain T, 2 Ligand-Water interactions Metal complexes: T:E.27, T:E.62, T:H.65, H2O.133, H2O.134 ZN.145: 5 residues within 4Å: Chain T: E.62, H.65, E.107, Q.141 Ligands: ZN.144 5 PLIP interactions: 3 interactions with chain T, 2 Ligand-Water interactions Metal complexes: T:E.62, T:E.107, T:E.107, H2O.133, H2O.137 ZN.146: 7 residues within 4Å: Chain B: H.173 Chain H: H.173 Chain N: H.173 Chain T: H.173 Ligands: ZN.14, ZN.58, ZN.102 5 PLIP interactions: 1 interactions with chain T, 1 interactions with chain B, 1 interactions with chain H, 1 interactions with chain N, 1 Ligand-Water interactions Metal complexes: T:H.173, B:H.173, H:H.173, N:H.173, H2O.139 ZN.147: 4 residues within 4Å: Chain A: H.122 Chain T: H.122 Chain X: H.122 Ligands: BYX.149 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain X, 1 interactions with chain T Metal complexes: A:H.122, X:H.122, T:H.122 ZN.150: 3 residues within 4Å: Chain J: H.122 Chain U: H.122 Chain W: H.122 3 PLIP interactions: 1 interactions with chain W, 1 interactions with chain U, 1 interactions with chain J Metal complexes: W:H.122, U:H.122, J:H.122 ZN.151: 5 residues within 4Å: Chain U: E.27, E.62, H.65, Q.141 Ligands: ZN.152 5 PLIP interactions: 3 interactions with chain U, 2 Ligand-Water interactions Metal complexes: U:E.27, U:E.62, U:H.65, H2O.140, H2O.140 ZN.152: 5 residues within 4Å: Chain U: E.62, H.65, E.107, Q.141 Ligands: ZN.151 5 PLIP interactions: 3 interactions with chain U, 2 Ligand-Water interactions Metal complexes: U:E.62, U:E.107, U:E.107, H2O.140, H2O.142 ZN.153: 7 residues within 4Å: Chain C: H.173 Chain I: H.173 Chain O: H.173 Chain U: H.173 Ligands: ZN.21, ZN.65, ZN.109 4 PLIP interactions: 1 interactions with chain C, 1 interactions with chain U, 1 interactions with chain I, 1 interactions with chain O Metal complexes: C:H.173, U:H.173, I:H.173, O:H.173 ZN.154: 6 residues within 4Å: Chain J: D.131, E.134 Chain U: D.131, E.134 Chain W: D.131, E.134 3 PLIP interactions: 1 interactions with chain W, 1 interactions with chain U, 1 interactions with chain J Metal complexes: W:E.134, U:E.134, J:E.134 ZN.161: 4 residues within 4Å: Chain V: E.62, E.107, Q.141 Ligands: ZN.162 5 PLIP interactions: 3 interactions with chain V, 2 Ligand-Water interactions Metal complexes: V:E.62, V:E.107, V:E.107, H2O.148, H2O.152 ZN.162: 5 residues within 4Å: Chain V: E.27, E.62, H.65, Q.141 Ligands: ZN.161 5 PLIP interactions: 3 interactions with chain V, 2 Ligand-Water interactions Metal complexes: V:E.27, V:E.62, V:H.65, H2O.148, H2O.148 ZN.168: 5 residues within 4Å: Chain W: E.27, E.62, H.65, Q.141 Ligands: ZN.169 4 PLIP interactions: 3 interactions with chain W, 1 Ligand-Water interactions Metal complexes: W:E.27, W:E.62, W:H.65, H2O.155 ZN.169: 5 residues within 4Å: Chain W: E.62, H.65, E.107, Q.141 Ligands: ZN.168 3 PLIP interactions: 3 interactions with chain W Metal complexes: W:E.62, W:E.107, W:E.107 ZN.172: 5 residues within 4Å: Chain X: E.27, E.62, H.65, Q.141 Ligands: ZN.173 4 PLIP interactions: 3 interactions with chain X, 1 Ligand-Water interactions Metal complexes: X:E.27, X:E.62, X:H.65, H2O.161 ZN.173: 5 residues within 4Å: Chain X: E.62, H.65, E.107, Q.141 Ligands: ZN.172 4 PLIP interactions: 3 interactions with chain X, 1 Ligand-Water interactions Metal complexes: X:E.62, X:E.107, X:E.107, H2O.166

20 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 7 residues within 4Å: Chain A: N.25, L.26, Y.29, D.84, I.85, Q.86, N.109 Ligand excluded by PLIP PGE.6: 7 residues within 4Å: Chain A: E.17, A.18, N.21, R.79, F.81, Q.83 Chain B: K.87 Ligand excluded by PLIP PGE.31: 7 residues within 4Å: Chain D: N.139, K.143, K.146 Chain F: D.42 Chain Q: K.71, Q.75 Ligands: PEG.126 Ligand excluded by PLIP PGE.32: 5 residues within 4Å: Chain D: R.9, Q.10, N.11, Y.12, H.13 Ligand excluded by PLIP PGE.33: 5 residues within 4Å: Chain D: Q.86, K.87, P.88, D.89, E.90 Ligand excluded by PLIP PGE.49: 7 residues within 4Å: Chain G: N.25, L.26, Y.29, D.84, I.85, Q.86, N.109 Ligand excluded by PLIP PGE.50: 7 residues within 4Å: Chain G: E.17, A.18, N.21, R.79, F.81, Q.83 Chain H: K.87 Ligand excluded by PLIP PGE.75: 7 residues within 4Å: Chain J: N.139, K.143, K.146 Chain L: D.42 Chain W: K.71, Q.75 Ligands: PEG.170 Ligand excluded by PLIP PGE.76: 5 residues within 4Å: Chain J: R.9, Q.10, N.11, Y.12, H.13 Ligand excluded by PLIP PGE.77: 5 residues within 4Å: Chain J: Q.86, K.87, P.88, D.89, E.90 Ligand excluded by PLIP PGE.93: 7 residues within 4Å: Chain M: N.25, L.26, Y.29, D.84, I.85, Q.86, N.109 Ligand excluded by PLIP PGE.94: 7 residues within 4Å: Chain M: E.17, A.18, N.21, R.79, F.81, Q.83 Chain N: K.87 Ligand excluded by PLIP PGE.119: 7 residues within 4Å: Chain K: K.71, Q.75 Chain P: N.139, K.143, K.146 Chain R: D.42 Ligands: PEG.82 Ligand excluded by PLIP PGE.120: 5 residues within 4Å: Chain P: R.9, Q.10, N.11, Y.12, H.13 Ligand excluded by PLIP PGE.121: 5 residues within 4Å: Chain P: Q.86, K.87, P.88, D.89, E.90 Ligand excluded by PLIP PGE.137: 7 residues within 4Å: Chain S: N.25, L.26, Y.29, D.84, I.85, Q.86, N.109 Ligand excluded by PLIP PGE.138: 7 residues within 4Å: Chain S: E.17, A.18, N.21, R.79, F.81, Q.83 Chain T: K.87 Ligand excluded by PLIP PGE.163: 7 residues within 4Å: Chain E: K.71, Q.75 Chain V: N.139, K.143, K.146 Chain X: D.42 Ligands: PEG.38 Ligand excluded by PLIP PGE.164: 5 residues within 4Å: Chain V: R.9, Q.10, N.11, Y.12, H.13 Ligand excluded by PLIP PGE.165: 5 residues within 4Å: Chain V: Q.86, K.87, P.88, D.89, E.90 Ligand excluded by PLIP

76 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 8 residues within 4Å: Chain A: H.128, D.131, F.132, T.135, H.136 Chain T: E.134, T.135, N.139 Ligand excluded by PLIP PEG.8: 7 residues within 4Å: Chain A: Y.40, R.43, D.45, V.46, D.92, E.94 Chain F: K.157 Ligand excluded by PLIP PEG.9: 5 residues within 4Å: Chain A: Y.54, H.57, Q.58, A.144, E.147 Ligand excluded by PLIP PEG.10: 11 residues within 4Å: Chain A: V.8, R.9, Q.10, Y.12, Q.75, R.76, G.77 Chain T: N.111, L.115, V.142, I.145 Ligand excluded by PLIP PEG.11: 4 residues within 4Å: Chain A: Q.7 Chain B: D.45 Chain T: T.153, R.156 Ligand excluded by PLIP PEG.16: 3 residues within 4Å: Chain B: L.26, Y.29, D.89 Ligand excluded by PLIP PEG.23: 2 residues within 4Å: Chain C: K.71 Chain D: K.49 Ligand excluded by PLIP PEG.24: 9 residues within 4Å: Chain C: N.11, N.125, D.126, P.127 Chain E: Q.112, L.115, E.116, H.118, K.119 Ligand excluded by PLIP PEG.25: 7 residues within 4Å: Chain C: V.142, K.143, K.146, E.147 Chain U: D.42 Chain V: K.71, Q.75 Ligand excluded by PLIP PEG.26: 10 residues within 4Å: Chain C: A.47, L.48, Y.168, D.171, K.172 Chain O: D.150, H.151, N.154, F.170, T.174 Ligand excluded by PLIP PEG.27: 5 residues within 4Å: Chain C: R.22, N.25, L.26, Q.83 Ligands: PEG.28 Ligand excluded by PLIP PEG.28: 4 residues within 4Å: Chain C: N.25, L.26, Y.29 Ligands: PEG.27 Ligand excluded by PLIP PEG.34: 7 residues within 4Å: Chain C: S.4 Chain D: Y.40, R.43, D.45, V.46, D.92, E.94 Ligand excluded by PLIP PEG.35: 5 residues within 4Å: Chain D: N.25, L.26, Y.29, Q.86, N.109 Ligand excluded by PLIP PEG.38: 9 residues within 4Å: Chain E: L.72, Q.75, H.128, D.131, F.132, T.135, H.136 Chain V: N.139 Ligands: PGE.163 Ligand excluded by PLIP PEG.39: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP PEG.42: 5 residues within 4Å: Chain F: N.25, L.26, Y.29, Q.86, N.109 Ligand excluded by PLIP PEG.43: 3 residues within 4Å: Chain F: Q.10 Chain M: K.108, Q.112 Ligand excluded by PLIP PEG.44: 11 residues within 4Å: Chain F: V.8, R.9, Q.10, Y.12, Q.75, R.76, D.126, H.128 Chain M: N.111, L.115, V.142 Ligand excluded by PLIP PEG.51: 8 residues within 4Å: Chain G: H.128, D.131, F.132, T.135, H.136 Chain N: E.134, T.135, N.139 Ligand excluded by PLIP PEG.52: 7 residues within 4Å: Chain G: Y.40, R.43, D.45, V.46, D.92, E.94 Chain L: K.157 Ligand excluded by PLIP PEG.53: 5 residues within 4Å: Chain G: Y.54, H.57, Q.58, A.144, E.147 Ligand excluded by PLIP PEG.54: 11 residues within 4Å: Chain G: V.8, R.9, Q.10, Y.12, Q.75, R.76, G.77 Chain N: N.111, L.115, V.142, I.145 Ligand excluded by PLIP PEG.55: 4 residues within 4Å: Chain G: Q.7 Chain H: D.45 Chain N: T.153, R.156 Ligand excluded by PLIP PEG.60: 3 residues within 4Å: Chain H: L.26, Y.29, D.89 Ligand excluded by PLIP PEG.67: 2 residues within 4Å: Chain I: K.71 Chain J: K.49 Ligand excluded by PLIP PEG.68: 9 residues within 4Å: Chain I: N.11, N.125, D.126, P.127 Chain K: Q.112, L.115, E.116, H.118, K.119 Ligand excluded by PLIP PEG.69: 7 residues within 4Å: Chain I: V.142, K.143, K.146, E.147 Chain O: D.42 Chain P: K.71, Q.75 Ligand excluded by PLIP PEG.70: 10 residues within 4Å: Chain I: A.47, L.48, Y.168, D.171, K.172 Chain U: D.150, H.151, N.154, F.170, T.174 Ligand excluded by PLIP PEG.71: 5 residues within 4Å: Chain I: R.22, N.25, L.26, Q.83 Ligands: PEG.72 Ligand excluded by PLIP PEG.72: 4 residues within 4Å: Chain I: N.25, L.26, Y.29 Ligands: PEG.71 Ligand excluded by PLIP PEG.78: 7 residues within 4Å: Chain I: S.4 Chain J: Y.40, R.43, D.45, V.46, D.92, E.94 Ligand excluded by PLIP PEG.79: 5 residues within 4Å: Chain J: N.25, L.26, Y.29, Q.86, N.109 Ligand excluded by PLIP PEG.82: 9 residues within 4Å: Chain K: L.72, Q.75, H.128, D.131, F.132, T.135, H.136 Chain P: N.139 Ligands: PGE.119 Ligand excluded by PLIP PEG.83: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP PEG.86: 5 residues within 4Å: Chain L: N.25, L.26, Y.29, Q.86, N.109 Ligand excluded by PLIP PEG.87: 3 residues within 4Å: Chain L: Q.10 Chain S: K.108, Q.112 Ligand excluded by PLIP PEG.88: 11 residues within 4Å: Chain L: V.8, R.9, Q.10, Y.12, Q.75, R.76, D.126, H.128 Chain S: N.111, L.115, V.142 Ligand excluded by PLIP PEG.95: 8 residues within 4Å: Chain B: E.134, T.135, N.139 Chain M: H.128, D.131, F.132, T.135, H.136 Ligand excluded by PLIP PEG.96: 7 residues within 4Å: Chain M: Y.40, R.43, D.45, V.46, D.92, E.94 Chain R: K.157 Ligand excluded by PLIP PEG.97: 5 residues within 4Å: Chain M: Y.54, H.57, Q.58, A.144, E.147 Ligand excluded by PLIP PEG.98: 11 residues within 4Å: Chain B: N.111, L.115, V.142, I.145 Chain M: V.8, R.9, Q.10, Y.12, Q.75, R.76, G.77 Ligand excluded by PLIP PEG.99: 4 residues within 4Å: Chain B: T.153, R.156 Chain M: Q.7 Chain N: D.45 Ligand excluded by PLIP PEG.104: 3 residues within 4Å: Chain N: L.26, Y.29, D.89 Ligand excluded by PLIP PEG.111: 2 residues within 4Å: Chain O: K.71 Chain P: K.49 Ligand excluded by PLIP PEG.112: 9 residues within 4Å: Chain O: N.11, N.125, D.126, P.127 Chain Q: Q.112, L.115, E.116, H.118, K.119 Ligand excluded by PLIP PEG.113: 7 residues within 4Å: Chain C: D.42 Chain D: K.71, Q.75 Chain O: V.142, K.143, K.146, E.147 Ligand excluded by PLIP PEG.114: 10 residues within 4Å: Chain I: D.150, H.151, N.154, F.170, T.174 Chain O: A.47, L.48, Y.168, D.171, K.172 Ligand excluded by PLIP PEG.115: 5 residues within 4Å: Chain O: R.22, N.25, L.26, Q.83 Ligands: PEG.116 Ligand excluded by PLIP PEG.116: 4 residues within 4Å: Chain O: N.25, L.26, Y.29 Ligands: PEG.115 Ligand excluded by PLIP PEG.122: 7 residues within 4Å: Chain O: S.4 Chain P: Y.40, R.43, D.45, V.46, D.92, E.94 Ligand excluded by PLIP PEG.123: 5 residues within 4Å: Chain P: N.25, L.26, Y.29, Q.86, N.109 Ligand excluded by PLIP PEG.126: 9 residues within 4Å: Chain D: N.139 Chain Q: L.72, Q.75, H.128, D.131, F.132, T.135, H.136 Ligands: PGE.31 Ligand excluded by PLIP PEG.127: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP PEG.130: 5 residues within 4Å: Chain R: N.25, L.26, Y.29, Q.86, N.109 Ligand excluded by PLIP PEG.131: 3 residues within 4Å: Chain G: K.108, Q.112 Chain R: Q.10 Ligand excluded by PLIP PEG.132: 11 residues within 4Å: Chain G: N.111, L.115, V.142 Chain R: V.8, R.9, Q.10, Y.12, Q.75, R.76, D.126, H.128 Ligand excluded by PLIP PEG.139: 8 residues within 4Å: Chain H: E.134, T.135, N.139 Chain S: H.128, D.131, F.132, T.135, H.136 Ligand excluded by PLIP PEG.140: 7 residues within 4Å: Chain S: Y.40, R.43, D.45, V.46, D.92, E.94 Chain X: K.157 Ligand excluded by PLIP PEG.141: 5 residues within 4Å: Chain S: Y.54, H.57, Q.58, A.144, E.147 Ligand excluded by PLIP PEG.142: 11 residues within 4Å: Chain H: N.111, L.115, V.142, I.145 Chain S: V.8, R.9, Q.10, Y.12, Q.75, R.76, G.77 Ligand excluded by PLIP PEG.143: 4 residues within 4Å: Chain H: T.153, R.156 Chain S: Q.7 Chain T: D.45 Ligand excluded by PLIP PEG.148: 3 residues within 4Å: Chain T: L.26, Y.29, D.89 Ligand excluded by PLIP PEG.155: 2 residues within 4Å: Chain U: K.71 Chain V: K.49 Ligand excluded by PLIP PEG.156: 9 residues within 4Å: Chain U: N.11, N.125, D.126, P.127 Chain W: Q.112, L.115, E.116, H.118, K.119 Ligand excluded by PLIP PEG.157: 7 residues within 4Å: Chain I: D.42 Chain J: K.71, Q.75 Chain U: V.142, K.143, K.146, E.147 Ligand excluded by PLIP PEG.158: 10 residues within 4Å: Chain C: D.150, H.151, N.154, F.170, T.174 Chain U: A.47, L.48, Y.168, D.171, K.172 Ligand excluded by PLIP PEG.159: 5 residues within 4Å: Chain U: R.22, N.25, L.26, Q.83 Ligands: PEG.160 Ligand excluded by PLIP PEG.160: 4 residues within 4Å: Chain U: N.25, L.26, Y.29 Ligands: PEG.159 Ligand excluded by PLIP PEG.166: 7 residues within 4Å: Chain U: S.4 Chain V: Y.40, R.43, D.45, V.46, D.92, E.94 Ligand excluded by PLIP PEG.167: 5 residues within 4Å: Chain V: N.25, L.26, Y.29, Q.86, N.109 Ligand excluded by PLIP PEG.170: 9 residues within 4Å: Chain J: N.139 Chain W: L.72, Q.75, H.128, D.131, F.132, T.135, H.136 Ligands: PGE.75 Ligand excluded by PLIP PEG.171: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP PEG.174: 5 residues within 4Å: Chain X: N.25, L.26, Y.29, Q.86, N.109 Ligand excluded by PLIP PEG.175: 3 residues within 4Å: Chain A: K.108, Q.112 Chain X: Q.10 Ligand excluded by PLIP PEG.176: 11 residues within 4Å: Chain A: N.111, L.115, V.142 Chain X: V.8, R.9, Q.10, Y.12, Q.75, R.76, D.126, H.128 Ligand excluded by PLIP

4 x BYX: 2,2'-(1,4-phenylene)bis(N-hydroxyacetamide)(Non-covalent)

BYX.17: 5 residues within 4Å: Chain B: H.122 Chain F: H.122 Chain M: H.122, D.123 Ligands: ZN.15 3 PLIP interactions: 3 interactions with chain M Hydrophobic interactions: M:D.123 Water bridges: M:D.123, M:D.123 BYX.61: 5 residues within 4Å: Chain H: H.122 Chain L: H.122 Chain S: H.122, D.123 Ligands: ZN.59 3 PLIP interactions: 3 interactions with chain S Hydrophobic interactions: S:D.123 Water bridges: S:D.123, S:D.123 BYX.105: 5 residues within 4Å: Chain G: H.122, D.123 Chain N: H.122 Chain R: H.122 Ligands: ZN.103 3 PLIP interactions: 3 interactions with chain G Hydrophobic interactions: G:D.123 Water bridges: G:D.123, G:D.123 BYX.149: 5 residues within 4Å: Chain A: H.122, D.123 Chain T: H.122 Chain X: H.122 Ligands: ZN.147 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.123 Water bridges: A:D.123, A:D.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bailey, J.B. et al., Synthetic Modularity of Protein-Metal-Organic Frameworks. J. Am. Chem. Soc. (2017)

Release Date

2017-09-27

Peptides

Ferritin heavy chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
A

H
B

I
C

J
D

K
E

L
F

M
A

N
B

O
C

P
D

Q
E

R
F

S
A

T
B

U
C

V
D

W
E

X
F

Ferritin heavy chain

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