SMTL ID : 5upd.1

Methyltransferase domain of human Wolf-Hirschhorn Syndrome Candidate 1-Like protein 1 (WHSC1L1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 19 residues within 4Å: Chain A: R.103, G.104, W.105, T.145, N.146, F.147, Y.148, R.168, F.169, M.170, N.171, H.172, Y.209, E.220, C.221, H.222, C.223, L.232 Ligands: UNX.3 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:W.105, A:T.145, A:F.147, A:F.147, A:Y.148, A:Y.148, A:N.171, A:N.171, A:H.172, A:H.172, A:H.222 Water bridges: A:R.103, A:N.146, A:N.146

17 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 3 residues within 4Å: Chain A: I.24, K.25, K.28 Ligand excluded by PLIP UNX.3: 3 residues within 4Å: Chain A: Y.122, F.207 Ligands: SAM.1 Ligand excluded by PLIP UNX.4: 4 residues within 4Å: Chain A: V.185, N.186, D.188, R.190 Ligand excluded by PLIP UNX.5: 5 residues within 4Å: Chain A: N.27, L.126, D.188, V.189, R.190 Ligand excluded by PLIP UNX.6: 1 residues within 4Å: Chain A: K.22 Ligand excluded by PLIP UNX.7: 1 residues within 4Å: Chain A: P.176 Ligand excluded by PLIP UNX.8: 2 residues within 4Å: Chain A: E.179, T.180 Ligand excluded by PLIP UNX.9: 5 residues within 4Å: Chain A: E.96, R.108, T.109, K.110, G.202 Ligand excluded by PLIP UNX.10: 3 residues within 4Å: Chain A: P.18, P.19, Y.21 Ligand excluded by PLIP UNX.11: 3 residues within 4Å: Chain A: N.177, C.197, M.203 Ligand excluded by PLIP UNX.12: 2 residues within 4Å: Chain A: N.175, A.225 Ligand excluded by PLIP UNX.13: 3 residues within 4Å: Chain A: V.144, N.146, F.147 Ligand excluded by PLIP UNX.14: 3 residues within 4Å: Chain A: R.133, I.136, K.137 Ligand excluded by PLIP UNX.15: 4 residues within 4Å: Chain A: I.43, T.184, N.186, G.187 Ligand excluded by PLIP UNX.16: 8 residues within 4Å: Chain A: P.44, R.45, C.46, N.64, C.71, C.76, P.77 Ligands: ZN.20 Ligand excluded by PLIP UNX.17: 2 residues within 4Å: Chain A: Y.21, H.23 Ligand excluded by PLIP UNX.18: 3 residues within 4Å: Chain A: C.86, E.117, F.118 Ligand excluded by PLIP

3 x ZN: ZINC ION(Non-covalent)

ZN.19: 5 residues within 4Å: Chain A: C.46, C.48, C.56, C.62 Ligands: ZN.20 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.46, A:C.48, A:C.56, A:C.62 ZN.20: 6 residues within 4Å: Chain A: C.56, C.71, C.76, C.82 Ligands: UNX.16, ZN.19 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.56, A:C.71, A:C.76, A:C.82 ZN.21: 4 residues within 4Å: Chain A: C.174, C.221, C.223, C.228 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.174, A:C.221, A:C.223, A:C.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tempel, W. et al., Methyltransferase domain of human Wolf-Hirschhorn Syndrome Candidate 1-Like protein 1 (WHSC1L1). To Be Published

Release Date

2017-02-15

Peptides

Histone-lysine N-methyltransferase NSD3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase NSD3